G826545


Basic Information

Item Value
gene id G826545
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 60472910 ~ 60473144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU939876
GCTCTGTGCTTGTCCGTGCATGCACTTCATAGCCTATAGGCtgtggatcatttgattgagaccaacctaaatagcctataggtgcacttgataTTGTGTACCCAGCATAGAATCAGAGATGAGGAGAGACATCGGGCACACATTGATATATAACCTAATAAGCAACTAActctaaaacactgagaaatactgacatttcatcaattacaaattccctgaccctctcctgtgattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU939876 True 235 lncRNA 0.41 1 60472910 60473144

Neighbor

gene id symbol gene type direction distance location
LOC110531228 LOC106572534 coding upstream 169488 60288691 ~ 60304205 (+)
LOC110532568 LOC106572510 coding upstream 186832 60281781 ~ 60286078 (+)
LOC110532566 LOC106572511 coding upstream 244451 60144449 ~ 60228459 (+)
LOC110532564 LOC106572515 coding upstream 384908 60079288 ~ 60088002 (+)
LOC110532563 LOC106572516 coding upstream 395004 60065296 ~ 60077906 (+)
LOC110531229 LOC106572568 coding downstream 163379 60636523 ~ 61072400 (+)
LOC110532569 LOC106572541 coding downstream 630623 61103767 ~ 61156703 (+)
ptpn22 LOC106572545 coding downstream 858960 61332104 ~ 61362738 (+)
si:ch73-206d17.1 LOC106572549 coding downstream 1189109 61662253 ~ 61687521 (+)
trnaa-ugc-37 NA coding downstream 1257950 61731094 ~ 61731167 (+)
G826504 NA non-coding upstream 27106 60445581 ~ 60445804 (+)
G826492 NA non-coding upstream 34727 60437924 ~ 60438183 (+)
G826430 NA non-coding upstream 95410 60377270 ~ 60377500 (+)
G826419 NA non-coding upstream 106034 60361832 ~ 60366876 (+)
G826327 NA non-coding upstream 121330 60297281 ~ 60351580 (+)
G826552 NA non-coding downstream 5295 60478439 ~ 60478720 (+)
G826564 NA non-coding downstream 10803 60483947 ~ 60484328 (+)
G826566 NA non-coding downstream 12674 60485818 ~ 60486046 (+)
G826580 NA non-coding downstream 31234 60504378 ~ 60504588 (+)
G826665 NA non-coding downstream 98562 60571706 ~ 60571908 (+)
G826505 NA other upstream 26376 60446030 ~ 60446534 (+)
G825749 NA other upstream 462485 60010009 ~ 60010425 (+)
G825484 NA other upstream 873940 59598029 ~ 59598970 (+)
G824936 NA other upstream 1057897 59414147 ~ 59415013 (+)
LOC110532530 LOC106572481 other upstream 1090499 59374974 ~ 59382411 (+)
G826653 NA other downstream 89936 60563080 ~ 60563397 (+)
G826751 NA other downstream 188225 60661369 ~ 60661906 (+)
G827039 NA other downstream 739317 61212461 ~ 61251238 (+)
G828274 NA other downstream 1716038 62189182 ~ 62190606 (+)
LOC110532602 NA other downstream 2150095 62623239 ~ 62627845 (+)

Expression


Co-expression Network