XLOC_002724


Basic Information

Item Value
gene id XLOC_002724
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20842918 ~ 20888760 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005059
CAGTTTAGTCAAAGTCAAAGACTATATAATAAGGGGAGATTAATTTAGGAAAGGATTTGAACAATTTCTGTGATTGAAAGATGCTTTGGATGAACTAAGGAATACCCGGTTCATGGGATTCTTTGTTTATGATTGTGAATTGGACTAATTTACCACGCTGGAAGGTGTTACATGGAGCTTGTAAAGAAGGACAGTGTTTATGTGATCTACAACACACTTGTGATTCGTTATAGTTCAAGACTCACAACAAGAAATCTGCTTCTTTATGATACAGAGAACAGAAATTAGCAGTCAACTCCACTCTGTCTCTCAAGCCCGCCGATGTACATATCAAGTTACCgtacaaactggttacagcagaTAAACCTTCCACAtgcagTCTGCCAATCCAATGAGCTCCTGCAGCCCTGGACCTTTACGGATGATGCGGAGACAGACCCAAGAGTCGCATTTAGCCTCGCGGAAACGCTCATGGCAATGGCTCTAAAGCTAATGCGGTGAAGGAAAAGCCTGACTGAAGATTCAATGCAGAATCCTTGCCTTTGTTTTTGCTCCTGCGTGCTAACCATCATTCCTTTGGTAAAATCAATCCGGTCATTAAACTCAAGGGAAAGACTGTTGGGTATTTTTAGGGCGATTCACACTGCACTGTGACAGTAGCAGGTTAGTGTGGACCAACACCAGAGTATATTACGTCACTCAGAGATTTCGTGACCtcacaaaaacaaccaaatcaGCTTTTCACATGATTTCATTCTCcattttaatggttaaaataaattttattaatcaacaaGCATATCTGATTGATTAAAATGCTGAAAAAATATCTTGAGGATTCATATGAACATGAcgaaaacataaaatattaaaatgcttgTAAAGAGATCTCACCACAGTTCTGCCAATAAAATTACTGAAATCTGAAGAAATATGCCACACGTTAGTGTAAAAAATCATGAGATTCATTCACCCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005059 True 977 lncRNA 0.39 4 20842918 20888760

Neighbor

gene id symbol gene type direction distance location
XLOC_002723 kcnip3b coding downstream 136648 20653716 ~ 20706270 (-)
XLOC_002722 rassf2b coding downstream 192616 20641001 ~ 20650302 (-)
XLOC_002721 sprn2 coding downstream 205820 20635960 ~ 20637098 (-)
XLOC_002720 NA coding downstream 224105 20616776 ~ 20618813 (-)
XLOC_002719 nsd3 coding downstream 254029 20543279 ~ 20588889 (-)
XLOC_002725 BX004800.2 coding upstream 19682 20908442 ~ 20908556 (-)
XLOC_002726 pcdh1a coding upstream 31604 20920364 ~ 21054059 (-)
XLOC_002727 avd coding upstream 470302 21359062 ~ 21362320 (-)
XLOC_002728 fgf18b coding upstream 582556 21471316 ~ 21484065 (-)
XLOC_002729 zgc:165539 coding upstream 653165 21541925 ~ 21545117 (-)
XLOC_002716 BX294119.1 non-coding downstream 358988 20483814 ~ 20483930 (-)
XLOC_002714 NA non-coding downstream 386911 20448639 ~ 20456007 (-)
XLOC_002710 NA non-coding downstream 605947 20234014 ~ 20236971 (-)
XLOC_002708 CR450836.1 non-coding downstream 691590 20143797 ~ 20151328 (-)
XLOC_002730 BX957322.2 non-coding upstream 681436 21570196 ~ 21573457 (-)
XLOC_002731 NA non-coding upstream 739047 21627807 ~ 21649728 (-)
XLOC_002732 NA non-coding upstream 757394 21646154 ~ 21843863 (-)
XLOC_002744 BX005194.1 non-coding upstream 1383029 22271789 ~ 22271903 (-)

Expression


Co-expression Network