XLOC_027240 (si:dkeyp-38g8.5)


Basic Information

Item Value
gene id XLOC_027240
gene name si:dkeyp-38g8.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16315692 ~ 16319762 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053654
GAACCAACAGCAGAAGAAATGAACGAAACCCTCCATTTTCTCTTCTAGTGCCCTTCGCTTGTGCACTAGCGCCATGAGTAGCGCACTTGATGACTCAAAGACAACAGACACAAGTATGGACCACGAACTTTACACTGTACAGAGTCCCTCCGATGACATTAAGGATGGCCCAGAGCATTCAGAATTCATTTATAAGATGTCAAATGAAGAGTTTGTCAGATTCGTGAAGTTACGAGTGACCAACGATGCACTTTTCACTGGAAAGAGAAATTCTTCAACTCTGGCTTACAGGGCCATCCTGAAAGAGCTGGGTCTGCAAAGGGAGATTTCTGCCAGCCAGGCCAGGAGAAAATGGGAAAACCTTAAGATGAAGTATAAGgaaatgaagaatcCTCCGCCTGGTGTCTCGGTGAACCCCACTAACTGGCCATGGTTCTCCCTCATGGACGACGCCATGGAAGGAAGACTTGTGGGGAGCGATGTCACGCTAGACACTTCTTCGGTGGGCGACGACAGCGAGTATCGACCAAACAACTCCACGCGCAGGAGGAGCAAAAGGGCCCGCGAGCCAGACAGAAGCGAGATCGAGCTGTTCGTTGAAGAGGATGACATCATGTCTGAGGAAATGGGGCGAGACAGAGGGGATCTAGACAGAGACAGAGATGAGATGGAGCACGAAAGGGCCATCCTAGAAAGCGATAAAGCAGCTATTGAATATGAAAGGATGGTGCTAGAGCGAGAGAAGATGGTGCTAGACAGAGAACGAGCGGGAGTGGAAAGAGAACTGGCAGCACTGGATCGAGACAGAGCCTCTTTGGAGAGGGAAAAAGCCGCTGTGGAAAGAGACAGGGCCTCTGTGGAGTATATCCGAGCTCAGTTGGAAAAAGACAGAGCGATTCTTGACAGAGAAAGGGCTAAGCTTGAAAGAGAACGGGCCATCCTGGATCAACAGCGTGGGATTGAAAAAAGCGAGCAGACGGTTAATTTAAACGACAATTCAGAAGGAACTGACACCTCGATTCCCTTAGTGATGGAGCCGGCTTCATTAGAAAGGAGGCAGAAATTCCTCAACCTGTTTGAAAAGCTCATTGAGAACTTCTAAATCAGAGCTAAACGTTCTGAGTGGGACCCATTatgtatatttcattatttttgtacACCTTCAGTTTGAAGTAAAACCGTTTTCTGTTCCAGAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-62 No description available

Ensembl:

ensembl_id ENSDARG00000056954

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053654 True 1196 mRNA 0.48 4 16315692 16319762

Neighbor

gene id symbol gene type direction distance location
XLOC_027239 NA coding upstream 1793 16309076 ~ 16313899 (+)
XLOC_027238 NA coding upstream 103825 16190326 ~ 16211867 (+)
XLOC_027237 NA coding upstream 241986 16037168 ~ 16073706 (+)
XLOC_027236 NA coding upstream 292317 16008223 ~ 16023375 (+)
XLOC_027235 CR749763.5 coding upstream 311267 16001238 ~ 16004425 (+)
XLOC_027241 BX322608.1 coding downstream 4208 16323970 ~ 16347126 (+)
XLOC_027242 NA coding downstream 54507 16374269 ~ 16374692 (+)
XLOC_027243 NA coding downstream 215496 16535258 ~ 16538962 (+)
XLOC_027244 pkp2 coding downstream 390239 16710001 ~ 16725144 (+)
XLOC_027245 tcp11l2 coding downstream 406198 16725960 ~ 16742893 (+)
XLOC_027246 NA non-coding downstream 430494 16750256 ~ 16758036 (+)
XLOC_027247 NA non-coding downstream 432599 16752361 ~ 16753296 (+)
XLOC_027254 NA non-coding downstream 519791 16839553 ~ 16844705 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_02440029_02441937 NA coding CI01000020 null 2439954 ~ 2441937 (-)