XLOC_027243


Basic Information

Item Value
gene id XLOC_027243
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16535258 ~ 16538962 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057702
ACGGGCTTTAAGGGAATAAACAATCTGAGGAAAGTTTCGTTATAGTGTACtaacgatatggccgccgatatattgtgcatccctggATAAAAATCTCTGTTATaatgcactggacaagtctgaactaATTCAACCCACACATGGTGCGAGGCAGGCAATTCTGTACAATTACATaatctatggccttaaagatatAAACCTAATTTTGATATCGAACCGATATCGATcacaataaaaatagcatttatcggccgataatgaTATGGCAGACGATTTATGATGCATTCCCAGATAAAAATCTTCATTATAGTGCagtggacaagtctgaacaagtctAAACAAATTCGACTCACGCATCCGCGTGGCAGGCATTTCAGTCTAATTACACAATCTTTCAGCTTAAAGATATCAGCCTAATTTTGATATCAGACCGAtaacgataacattaaaaattgcatttatcgGCCAATAATGATAGGGCAAATTTTACTCACGCATGGAGCGAGGCAGGCAGTTCAGTACAATTATTTAATCTTTTGGCTTAAAGATGTCAGCCAAATTTTGATATCACACCGATAACGATAACATCCCTAGGTAAAAATCTTTGTTATAGTGCACTAGACAAGTCTGAACAAATTCGACCCAAGGATGTGTGAGGCAAGCATTTatgtacaattacgtaatcttTCGGCTTGAAGATATCGGCGTAATTTTGACATCGACACATAGCGATAACATTAAAAGTAGTGTATCGGCCGCTTGCAATGTCCCGCCGATATATCATGCATCCCTAGATAAAACTCTCCCAACCCTGTTGTATTAAATATcttccaaaaacaaacaaaggatGAAATATCAAAACGGATATTCCTAAATAACCCTGCTTTGATAAAGAACAAGACCAAGTCCACTGGAAAACATTGCCAAGATAGGAAATCTTTTATTACAGAGAAAAAAACTTTTCTTCCAAAATATAGAAATCTGTACAACTTCCGCACAATCAATTTACATGAACTGTACAAATTTACAGCAGTTCATCACAACATACCCAAGAATGAGGAAAAGAATGAACACAAGAGATGTACAGACGGGGGGGGGGAATAAAATCACAAGATACAGACAGCTTTATCTTGGGTTGCtcagaattttttcttttttttcgttttaatttaaaaagaaagaaaagaaaagaaaaaaaacgagGAAAGTGTATCAGCACAGAGCATGGAaactgataaatatatatattttttaccaaaACAACTTTGGTCCTCTCCAACACTCCTAACACGAATGGCTTCACTTATGAAAGAGGAATTCatgttaaaatatgaaatacaaaaaGGAACACGTCTACACACAGCAAAATATCAATTATTGGCACTTCCCATATGTATGGTTATGTACTTAATCTACCATATGTTGTACAATAACAATACATTCTACAAATATGGAACCACCTCAGATGCGAAAGTGGCAATAACGCGAATCACTTCTGAAATGACCGACAAAATTCCCGACCGAATCATTCCCTTCTGTTTTTCACATCTTAACCTGCACATCCATAAGGGTTTCAATGAATGTCTGTGGCCTGAGCTTGGCAATACATTCCAATCGAGACACGGTGGTCTCAAAGTCACATAACTTCAATGTTTAACCTATTAGTGCATTTCATGTGCTCTTGCCTCCAAGTAGACTTGAGTTTAGACTCACACAACGATACTTAAAACTAGTGTGCAAACAATTACCGAACTGAAGCGGAGAGTTGAAACGGTTTGCTGATGTTATTTTCGGTGGAGGTGGGGGGGCAAAGTAGTTTGTAGtagatctaaaataaaaataaaaaaaagcactcGAATTGTCTGTTCCAATTTGGTTGAGATCACCAGAATGTGGTTTAAGAGCTTTAACATTAAAACCAACAGGCAAAGTGTGGGGGGAGGGGCGCCTTtcagagtttaaagcattcagaaaGGTGGGATGGCGATGGCGTTCTAgtcatacgtttttttttttaaatagactttCCATCTCTCTATTAAAGTGACTGGAccaaagcaagaaagaaaggGACGGCAGTGCATCGATAACCCGGCGTTACCCATGGTCCTCTAACGTCAAAAGTATTAACACACAAAGGACTGATAATCAGCACCTTGTCTCGGCAGTTAGCGGCTAAGGCAAGAGCAATATgtcgcacacacatacacgcacgcacgcaaagcCTGCAACCCGCTTATTTCCACCCAATGTAAACAGAATCGTCCAGAAACCAGGAGCACCCCATGTATCTCTCTTCTCATCCCGACTCGGCTCTTTATGTAAGGCTCAGTTTGGTTTGGAGTGCACTTGGTGTGTGCGTGCTGGCATAAATACTCTCCTCCAGGCTGCGAGAAGGGGGCCGGAGAGGATTGTAGCTGCCCTGATCTGAGGGTCCTACCCCCTTCTTCGGCCAGCCAATAGAGGGAGGTGATATGTTTTGACCGCGCACTCCTAGTTAAGACTGAGACCGGTGACGCCTGGCTGGAAAGTGCGTCGGGAGACCATCTGTAACAAGCAAGCACCACTGGGGCTTCTGCGATTCTGCGAGGAGATAGGAATACTGGTCCATTTGTCGACGCCGTTTCTTGCCGGTCTGTTAGCCACATACTGGCCATTAAATGGAGTCCTAATCTCTAACATGAATCAGTCATTAAAAATGGCAAGAGAGAATAACCTGGGATTGAAATGTCTCTCTCACCTTCACAAATATTGCAACCACGTCGCTCCATAAAGAGCGCAAGCAGAGATAACGATTTACGACAACTGAATAAAGAGGTATGCGATGGAATGCAGTTGGGTCGAATCGAAAACGTCATCCCACACAGTCTAAAATGTCAAAGTGCATTCAACATCCTTTCTAAAGGAGGCAGAAAGTAAAGACCACGTCTGCTCCAagtcaagaaaaacaaaaacaaaccttgCTACATTTTTCATTTTGGCATGACGAGGggcttaaataaatcaaatgtgtcGTCGTTGttgggtttttcttttttttttcttctcttttttgttAGAAATTACATTCATCCAGGAGGGAGCCCCTAGAAAAGCTACAAGCATGAGAACCTTTGCATCACAGTGCCATCGACGGCTAGCGTGGGTAACAGTATGACACAGATATTCCACAGAGGCAGTGTACAGGATGGAGGCGGCTTGAAACCGGTTCATGTCGACCTGAAGCCCAAAAGAAGCCCTACCAGACACCAAGAAGAGACAAAAGTACCGCTTTGTGGTCCAAAAAAGTGAGGTTTCCATCACCTGGACGATAGGAcacatcctgt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057702 True 3326 lncRNA 0.41 2 16535258 16538962

Neighbor

gene id symbol gene type direction distance location
XLOC_027242 NA coding upstream 160566 16374269 ~ 16374692 (+)
XLOC_027241 BX322608.1 coding upstream 188132 16323970 ~ 16347126 (+)
XLOC_027240 si:dkeyp-38g8.5 coding upstream 215496 16315692 ~ 16319762 (+)
XLOC_027239 NA coding upstream 221359 16309076 ~ 16313899 (+)
XLOC_027238 NA coding upstream 323391 16190326 ~ 16211867 (+)
XLOC_027244 pkp2 coding downstream 171039 16710001 ~ 16725144 (+)
XLOC_027245 tcp11l2 coding downstream 186998 16725960 ~ 16742893 (+)
XLOC_027246 NA coding downstream 211294 16750256 ~ 16758036 (+)
XLOC_027247 NA coding downstream 213399 16752361 ~ 16753296 (+)
XLOC_027248 BX649500.1 coding downstream 229999 16768961 ~ 16773254 (+)
XLOC_027237 NA non-coding upstream 461552 16037168 ~ 16073706 (+)
XLOC_027236 NA non-coding upstream 511883 16008223 ~ 16023375 (+)
XLOC_027254 NA non-coding downstream 300591 16839553 ~ 16844705 (+)
XLOC_027256 NA non-coding downstream 425341 16964303 ~ 16966927 (+)
XLOC_027257 NA non-coding downstream 442457 16981419 ~ 16985283 (+)

Expression


Co-expression Network