XLOC_027246


Basic Information

Item Value
gene id XLOC_027246
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16750256 ~ 16758036 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057703
CTTTAATTTGCTGTTGAGCTGGAATATGTGCTGTTTAAACACATTAAGAGTCTGTCGCTGAGCTGTCATCtgtaaattttgtatttaaatcaAACTGCGCGTGTTTTGTTTTGGTGTCTGTCATCACGCGCTCCTTGTTGTCAAACAAACACCTGAAGCTGTGAGTCAGACTGGACGCGAAGCCGCTCGCGCCGCCTCGTGGAGCGGGTGAAGAACTGCACTTCCGCTTCTAAAAACGTAGTTTCACTTTGTTCAGTTACTGAAAACATATAattttacactttattatctGCATACTCATCCTCTAAAGTTGAGCTTTTGAGATTATCAGCTCTCTCTTGCGAGCAAGAGTCCCTATATGAGTAAATACTATAACAATAGTACCAACACAGCAAATTCCAATCCAACATAGCAGTGTATCTACCTCTATACCACAGATCTTGATCCTGAACATCTGAAAGAAGTTATATTTGAGTCTTCACCTGTCATGTGCCTTGTGAATAAACAATACAACCACTAAAGTCACACTGCTGTGCTCAAACCTCTCACTTCATTGCAATCTTAGTTCAGTTTAGGTGTGTTTTAGTCAGTTGAGCCACTGCTGTTTACACACTAACTGCACACTGTTTCAGACACTTTGATGAATTTACTGCAGCTCATGGTTTCAACACAAGCAATAATGAGATTTGAACTCACGTCTTCTTGACTAACACACCACACTTTAATGCTGAGCCACTGAGTCTCCAGTCTTTACTCTTTATTAAAACTAAAGTGTTTCAACTGTTCGAGACTCATTTTTGGATTGATTTAAAATGTCACATGcagaaataataattcattaaactGATAACACGAACATCATTcgtaaacattcatttattcaagttatttgaaataaaaacaagagtCTCATTCGCCTTGAAGCTTCTTGTGATCTGAAAGACTTTAATAACAGCATCAGGTGTTattgatcaggctggaggtgaAATACTGAAGTGGATCTTCAGGATCAGGATTAGACAAGCGCTCGAGAAAAGAAAAGTCTTGATTTAATTCAGTTTTCATGTATTAATGCAGGTCCTCTTAATGTCCACAAGATGGAGCTGAAGCACTGATCTGCTCTCATGCATCTGTTAGAAATAAAGCTGCCAGTTAATGTTTACttgtcattattatcatcagtttAAATAAATTGAAAGCAATCTCCATTTAAACACATTCATATCTCCAAACATGCCGTTTGCACACAATAATTAAGTCAAATGCTACTTTTAATGTGCACAGtgacatcaaaacaaaacaagtttAAGTGAACACTTAAGACAGATGTGAAACAGATAAACTGCACAGAGACACAGACTAAACGAGCTTCTGGAAATCTTTTGTCCTGTTCTCAGTGTTTACACTTGAGGCTTGTGTTATACCACTACCTTACCACATCAGCTTCTTCAGATCCTAAATAAATCATAGATTAGTTTGCAAATTTACGAAAATCAAGCCCCAGTTTAGCCTGATCCAGTTCACTGAAGCGAAAGTGCAGTTCTTCATCCGCTCCACTAGGCGGCGCGAGCGACTTCACGTCCTGTCTGACTCAGCTTCAGGTGTTTGTTTGACAACAAGGAGCGCGTGATGACAGACACCAAAACAAAACGCGTGCAGTTTGatttaaatacacaatttacaAATGACAGCTTAGCGACAGACTCTTAATGTGTTTAAACAGCACATATTCCAGCTCAACAGCAAATTAAAGCAGCGGAATCTGCGATAAAGTGCAGGAATGGAGTGAAGAGACTCACCTAATGAAGGTTGTGTTTGGACTGTTCAGCCAACAGAATCAGAGCTCTGGGACAGTTGACAGCCATGGACTGTAAGGATGGACGTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057703 True 1887 lncRNA 0.39 2 16750256 16758036

Neighbor

gene id symbol gene type direction distance location
XLOC_027245 tcp11l2 coding upstream 7363 16725960 ~ 16742893 (+)
XLOC_027244 pkp2 coding upstream 25112 16710001 ~ 16725144 (+)
XLOC_027243 NA coding upstream 211294 16535258 ~ 16538962 (+)
XLOC_027242 NA coding upstream 375564 16374269 ~ 16374692 (+)
XLOC_027241 BX322608.1 coding upstream 403130 16323970 ~ 16347126 (+)
XLOC_027248 BX649500.1 coding downstream 10925 16768961 ~ 16773254 (+)
XLOC_027249 BX649476.1 coding downstream 19679 16777715 ~ 16781842 (+)
XLOC_027250 STMP1 coding downstream 26517 16784553 ~ 16786244 (+)
XLOC_027251 golt1ba coding downstream 29004 16787040 ~ 16792196 (+)
XLOC_027252 spx coding downstream 36382 16794418 ~ 16797485 (+)
XLOC_027239 NA non-coding upstream 436357 16309076 ~ 16313899 (+)
XLOC_027238 NA non-coding upstream 538389 16190326 ~ 16211867 (+)
XLOC_027237 NA non-coding upstream 676550 16037168 ~ 16073706 (+)
XLOC_027254 NA non-coding downstream 81517 16839553 ~ 16844705 (+)
XLOC_027256 NA non-coding downstream 206267 16964303 ~ 16966927 (+)
XLOC_027257 NA non-coding downstream 223383 16981419 ~ 16985283 (+)
XLOC_027258 CR792413.1 non-coding downstream 303944 17061980 ~ 17062097 (+)
XLOC_027259 NA non-coding downstream 332660 17090696 ~ 17095120 (+)

Expression


Co-expression Network