G827004


Basic Information

Item Value
gene id G827004
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 61093346 ~ 61094644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU940365
CAAATCTGGAAATAAAATGTTCTTATTTTAGGACTATTACTTATCACTATTACACAGACCAGCAGGCCTACTACACGGATCAGCAGGACTATTACACAGACCAGCAGGCCTACTACACGGATCAGCAGGACTATTACACAGACCAGCAGGCCTACTACACGGATCAGCAGGACTATTACAGGGACCAGCAGGACCATTACAGGGAACAGCAGGACTATTTCACAGACCAGCAGGACTATTACAGGGACCAGCAGGACTATTACAgggactcaaatcaaatcaatcaaatcaaagtttatttgtcacgtgcgccgaatacaacaggtgaaatgcttacttacaggctctaaccaatagtgcgaaaaaggtattaggtgaacaataggtaggtacaacagtaaagacacaggctatatacagtagcgaggctataaaagtagcgaggctacatacagacaccggttagtcaggctgattgaggtagaatgtacatgtagatatgtttaaagggactatgcatatatgatgaacagagagtagcagtagtgtaaaagaggggttggtgggtagtgggtgggacacaatgcagacagcccggttagccaatgtgcgggagcactgattggtcggcccaattgaggtactATGTATAGTATAGTTAAAGGGaccatgcatatatgataaacagagaataACAGCAGCGGGACTATTACAGGGACCAGGATCTGGAGCTTAAATAAGAAATGCTCTACAAATGGCCAGTTTAGTACATGGACATGGTCTTAATATAACCCTATTATTCCTCCTGTGCTCTGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU940365 True 816 lncRNA 0.44 3 61093346 61094644

Neighbor

gene id symbol gene type direction distance location
LOC110531229 LOC106572568 coding upstream 20946 60636523 ~ 61072400 (+)
LOC110531228 LOC106572534 coding upstream 789924 60288691 ~ 60304205 (+)
LOC110532568 LOC106572510 coding upstream 807268 60281781 ~ 60286078 (+)
LOC110532566 LOC106572511 coding upstream 864887 60144449 ~ 60228459 (+)
LOC110532564 LOC106572515 coding upstream 1005344 60079288 ~ 60088002 (+)
LOC110532569 LOC106572541 coding downstream 9123 61103767 ~ 61156703 (+)
ptpn22 LOC106572545 coding downstream 237460 61332104 ~ 61362738 (+)
si:ch73-206d17.1 LOC106572549 coding downstream 567609 61662253 ~ 61687521 (+)
trnaa-ugc-37 NA coding downstream 636450 61731094 ~ 61731167 (+)
LOC110531232 djc16 coding downstream 842775 61937419 ~ 61942640 (+)
G827002 NA non-coding upstream 3666 61089435 ~ 61089680 (+)
G826995 NA non-coding upstream 11054 61082046 ~ 61082292 (+)
G826988 NA non-coding upstream 30178 61062003 ~ 61063168 (+)
G826981 NA non-coding upstream 35581 61038389 ~ 61057765 (+)
G827005 NA non-coding downstream 274 61094918 ~ 61095120 (+)
G827038 NA non-coding downstream 108565 61203209 ~ 61247780 (+)
G827034 LOC106572544 non-coding downstream 119909 61214553 ~ 61302890 (+)
G827042 NA non-coding downstream 125939 61220583 ~ 61262656 (+)
G827077 NA non-coding downstream 202849 61297493 ~ 61302306 (+)
G826751 NA other upstream 431440 60661369 ~ 60661906 (+)
G826653 NA other upstream 529949 60563080 ~ 60563397 (+)
G826505 NA other upstream 646812 60446030 ~ 60446534 (+)
G825749 NA other upstream 1082921 60010009 ~ 60010425 (+)
G825484 NA other upstream 1494376 59598029 ~ 59598970 (+)
G827039 NA other downstream 117817 61212461 ~ 61251238 (+)
G828274 NA other downstream 1094538 62189182 ~ 62190606 (+)
LOC110532602 NA other downstream 1528595 62623239 ~ 62627845 (+)
LOC110532619 LOC106572645 other downstream 2470934 63565578 ~ 63601970 (+)
G830755 gp182 other downstream 3219434 64314078 ~ 64316656 (+)

Expression


Co-expression Network