G827242


Basic Information

Item Value
gene id G827242
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 61705692 ~ 61707241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU940661
ttctacaatgtagaaaatagtaaaaataaagaaaacccttgaatgagtaggtgttctacaaCTTTGACCGGCAGTGTATAGTACATTTATAGCGGAGACAGACTGGTGGGGAGGGAGTAAGGGACTGTGCATACATACTACTATGATTTAGTAATGGACTGTCCACACATACTGCTATAGTGCAACCCTGAGACATTGACTCTACCAGGCTGCTGATTCATTAAGCTGGTTGACTGGCAAAACCAGTGACCTGGAACAATGACAAACACATGGCAGCAACTTTCACATGGATGGGAAGCTATTAAAAAAATTATCAATATTTAACAGTTTGTCTGTTGTCTGTCTTTGTCATAGTTTGTAGAAATGGCATAGTAATTACTTGAAAATACAGTTTCCTTATACATTTGTTATGTGGAAACCAAGTATTATTATAACAAAGCTCCTATCAGAAGTAACTGTATAATACTGAGTAATTCCATCACAGTTATTAATGTAATCAAAGAATGAATGTAAGGGCAATTTCATTTGACTCTCATTGAAATAATAATGACAGAATCTTGCAACATATTGAAAGGCGTTATGTATAGGTCATCTTACTTAGCAAGCTGGAAGGTCTAATCATGCAAGCTGCTTCACTATGGCCAGAACTGTTTTTGTTCCTTGCAATGCTGTGAGGGTTTTTAATTAAGGCAAACAAAGGGATATTTGTTCTTGAGTGTCTGTGGCTCTGCTAGGGAGTTTAGATTTCACACAGAAGTTAATAAACTGAAGTGATAAAAGTAGCAAAGAGGTTGTCTTCGCAGACAAAAGACACACATAgcactaaataaaataaacataaattaAAAAGCTTACCATAGCAACTTAACAAAACAACAGTCTAACAAACTAACGTCTGTACGTGAAAAAGGGTTAAAGTCATGTTCCTACTATTCTGTTTTGCACACAGAACTTCGTGTGATTCCAAAGCCAGTCGAGTTCAACAGACTCTTCATCTGAAAGAAAACAGTGTATGAGACAAAGCACAAGCCAACAACAACTTCCAAGAAGAAGTTACGTTCACTTGACAAGCATGCTTCTCATTACCCATTTACATTACCTGTCTTTCGACAACCTAACCAGAAAACCCCAAATGGTCCACTATGCTGAATCAATAACCAGATATATTTAGTCTGTTTAGCCTAGAGTAAcagcaaatatttaaaaaatttgAAATAACCCAGTTATGACAGAAATACACTTCTTACTCTTCCGGAAAAATCAAAATAGCCATCTTGTGTTTCACAACTCAGTGGAAAGGATACACCAGGTCTGATCCCTAATCCAGCCAGGCAATACTGTCTCACCACTGATAAATACCATCCAAGTATCAAGCCAGACACATTCACACTTTTAAGTTAGTATTTCTGGGCCCATATTcagtgtctcagagtagaagtgctgatctaggaccagttttgccttttagattataatgaataagaaaggggggacctgatcctacactcttaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU940661 True 1513 lncRNA 0.37 2 61705692 61707241

Neighbor

gene id symbol gene type direction distance location
si:ch73-206d17.1 LOC106572549 coding upstream 18171 61662253 ~ 61687521 (+)
ptpn22 LOC106572545 coding upstream 342954 61332104 ~ 61362738 (+)
LOC110532569 LOC106572541 coding upstream 548989 61103767 ~ 61156703 (+)
LOC110531229 LOC106572568 coding upstream 633292 60636523 ~ 61072400 (+)
LOC110531228 LOC106572534 coding upstream 1402270 60288691 ~ 60304205 (+)
trnaa-ugc-37 NA coding downstream 23853 61731094 ~ 61731167 (+)
LOC110531232 djc16 coding downstream 230178 61937419 ~ 61942640 (+)
mul1b mulan coding downstream 377767 62085008 ~ 62093546 (+)
LOC110532588 LOC106572556 coding downstream 466211 62173452 ~ 62186259 (+)
LOC110532589 cpsf3l coding downstream 489662 62196903 ~ 62206569 (+)
G827245 NA non-coding upstream 65055 61619811 ~ 61640637 (+)
G827221 NA non-coding upstream 114671 61590794 ~ 61591021 (+)
G827218 NA non-coding upstream 118992 61586417 ~ 61586700 (+)
G827213 NA non-coding upstream 123585 61581850 ~ 61582107 (+)
G827302 NA non-coding downstream 21115 61728356 ~ 61728601 (+)
G827357 NA non-coding downstream 94556 61801797 ~ 61803508 (+)
G827408 NA non-coding downstream 157786 61865027 ~ 61870071 (+)
G827458 NA non-coding downstream 236693 61943934 ~ 61944525 (+)
G827422 NA non-coding downstream 237614 61944855 ~ 61945306 (+)
G827039 NA other upstream 454454 61212461 ~ 61251238 (+)
G826751 NA other upstream 1043786 60661369 ~ 60661906 (+)
G826653 NA other upstream 1142295 60563080 ~ 60563397 (+)
G826505 NA other upstream 1259158 60446030 ~ 60446534 (+)
G825749 NA other upstream 1695267 60010009 ~ 60010425 (+)
G828274 NA other downstream 481941 62189182 ~ 62190606 (+)
LOC110532602 NA other downstream 915998 62623239 ~ 62627845 (+)
LOC110532619 LOC106572645 other downstream 1858337 63565578 ~ 63601970 (+)
G830755 gp182 other downstream 2606837 64314078 ~ 64316656 (+)
G830923 NA other downstream 2958507 64665748 ~ 64666311 (+)

Expression


Co-expression Network