G827408


Basic Information

Item Value
gene id G827408
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 61865027 ~ 61870071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU940841
atagagacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaactaggtagttagagaagacaaggaacagctgggggaaagaggggaagaaaaggtaacctaatacgaccagcagagggagacagggtgaagagaaagaacaggaacaggacacaacatgacaatacatgacagtacccccccactcaccgagcgcctcctggcgcactcgaggaggaaacctggcggcaacggaggaaatcctcgatcagcgcacggtccagcacgtcccgagagggaacccaactcctctcctcaggaccgtacccctcccaatctacgaggtactggtgaccacggccccgaggacgcatgtccaaaatcctacggaccctgtagatgggtg

Function

NR:

description
PREDICTED: thrombospondin-3b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU940841 True 393 lncRNA 0.55 2 61865027 61870071

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-37 NA coding upstream 133860 61731094 ~ 61731167 (+)
si:ch73-206d17.1 LOC106572549 coding upstream 177506 61662253 ~ 61687521 (+)
ptpn22 LOC106572545 coding upstream 502289 61332104 ~ 61362738 (+)
LOC110532569 LOC106572541 coding upstream 708324 61103767 ~ 61156703 (+)
LOC110531229 LOC106572568 coding upstream 792627 60636523 ~ 61072400 (+)
LOC110531232 djc16 coding downstream 67348 61937419 ~ 61942640 (+)
mul1b mulan coding downstream 214937 62085008 ~ 62093546 (+)
LOC110532588 LOC106572556 coding downstream 303381 62173452 ~ 62186259 (+)
LOC110532589 cpsf3l coding downstream 326832 62196903 ~ 62206569 (+)
LOC110532593 LOC106572560 coding downstream 355713 62225784 ~ 62323683 (+)
G827357 NA non-coding upstream 61519 61801797 ~ 61803508 (+)
G827302 NA non-coding upstream 136426 61728356 ~ 61728601 (+)
G827242 NA non-coding upstream 157786 61705692 ~ 61707241 (+)
G827245 NA non-coding upstream 224390 61619811 ~ 61640637 (+)
G827458 NA non-coding downstream 73863 61943934 ~ 61944525 (+)
G827422 NA non-coding downstream 74784 61944855 ~ 61945306 (+)
G827423 agmat non-coding downstream 75824 61945895 ~ 61948613 (+)
G828151 NA non-coding downstream 124908 61994979 ~ 61995252 (+)
G828172 NA non-coding downstream 138124 62008195 ~ 62008645 (+)
G827039 NA other upstream 613789 61212461 ~ 61251238 (+)
G826751 NA other upstream 1203121 60661369 ~ 60661906 (+)
G826653 NA other upstream 1301630 60563080 ~ 60563397 (+)
G826505 NA other upstream 1418493 60446030 ~ 60446534 (+)
G825749 NA other upstream 1854602 60010009 ~ 60010425 (+)
G828274 NA other downstream 319111 62189182 ~ 62190606 (+)
LOC110532602 NA other downstream 753168 62623239 ~ 62627845 (+)
LOC110532619 LOC106572645 other downstream 1695507 63565578 ~ 63601970 (+)
G830755 gp182 other downstream 2444007 64314078 ~ 64316656 (+)
G830923 NA other downstream 2795677 64665748 ~ 64666311 (+)

Expression


Co-expression Network