G828274


Basic Information

Item Value
gene id G828274
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 62189182 ~ 62190606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU941829
gcaaagtatttggtcacctacaaacaagcaagatttctggctctcacagacctgcttacaagcaaaaattaagcaggaagcaccagtgactcggtctataaaaaagtggtcagataaagcagatgctaaactacaggactgttttgctatcacagactggaacatgttccgggattcttccgattgcattgaggagtacaccacatcagtcactggctttatcaataagtgcatcgaggacgtcgtccccacagtgactgtacgtacataccccaaccagaagccatggattacaggcaacattcacactgagctaaagggtagagctgatgctttcaaggtgcgggacacTGACCTGGAAGCTtgcaagaaatcctgctatgccctgcaacgaaccatcaaacaggcaaagcgtcaatacagggctaagattgaatcatactacaccggctctgacgctcgtcttatgtagcagggcctgcaaactattacagactacaaagggaagcacagctgcgagctgcccagtgacacaagcctaccagacgagctaaatcccttctatgctcgcttcgaggcaagcaacactgaggcatgcatgagagcaacagctgttctgtacaactgtgtgatcacgctctctgtagccgacgtgagtaagacctttaaacaggtcaacatacacaaggctgcggggcaagactgattaccaggacgtgtgctccgggcatgtgctgaccaactggcaggtgactttttaacatgtccctgattgagtctgtaataccaacatgtttcaagcagaccacaatagtgcctgtgcccaagaacacaaaagcaacctgcctaaatgactacagacccgtagcactcacgtccgtagccatgaagtgctttgaaaggttggtaatggctcacatcaacaccattatcccagaaaccctagacccaccccaatttgcacaccgccccaacagatccacagatgatgcaatctctattgcactctacactgccctctacactggacaaaaggaacacttgtgagaatgctattcattgactacagctcagcgttcaacaccatagtaccctcaaagctcaccaCTAAGGTAAGGATATTGGTTCTAAACACCTCCCTccgcaactgaatcctggacttcctaacaggccgcccccaggtggtgagggtaggtagcaacacatcttccATGCTaatcaacactggagctccacaggggtgcgtgctcagtcccctcctgtactccctgttcacccatgactgcatggccaggcacgactccaacaccctcaTTAAGTTTGCAAATTACAACAAtgacacagcctatagggaggaggtcagagacctggctgtgtggtgccagaataacaacctatccctcaacgtaaccaagactaaggaga

Function

NR:

description
putative RNA-directed DNA polymerase from transposon X-element

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU941829 True 1425 TUCP 0.49 1 62189182 62190606

Neighbor

gene id symbol gene type direction distance location
LOC110532588 LOC106572556 coding upstream 2923 62173452 ~ 62186259 (+)
mul1b mulan coding upstream 95636 62085008 ~ 62093546 (+)
LOC110531232 djc16 coding upstream 246542 61937419 ~ 61942640 (+)
trnaa-ugc-37 NA coding upstream 458015 61731094 ~ 61731167 (+)
si:ch73-206d17.1 LOC106572549 coding upstream 501661 61662253 ~ 61687521 (+)
LOC110532589 cpsf3l coding downstream 6297 62196903 ~ 62206569 (+)
LOC110532593 LOC106572560 coding downstream 35178 62225784 ~ 62323683 (+)
LOC110532591 LOC106572559 coding downstream 136384 62326990 ~ 62340784 (+)
LOC110532596 LOC106572563 coding downstream 169195 62359801 ~ 62382657 (+)
LOC118965938 NA coding downstream 196239 62386845 ~ 62391585 (+)
G828254 NA non-coding upstream 44063 62141530 ~ 62145119 (+)
G828209 NA non-coding upstream 123161 62065660 ~ 62066021 (+)
G828205 NA non-coding upstream 126448 62055738 ~ 62062734 (+)
G828206 NA non-coding upstream 128478 62055958 ~ 62060704 (+)
G828181 NA non-coding upstream 174163 62014810 ~ 62015019 (+)
G828408 NA non-coding downstream 25005 62215611 ~ 62216012 (+)
G828449 NA non-coding downstream 63118 62253724 ~ 62258585 (+)
G828427 NA non-coding downstream 155902 62346508 ~ 62373439 (+)
G828598 NA non-coding downstream 206185 62396791 ~ 62397015 (+)
G827039 NA other upstream 937944 61212461 ~ 61251238 (+)
G826751 NA other upstream 1527276 60661369 ~ 60661906 (+)
G826653 NA other upstream 1625785 60563080 ~ 60563397 (+)
G826505 NA other upstream 1742648 60446030 ~ 60446534 (+)
G825749 NA other upstream 2178757 60010009 ~ 60010425 (+)
LOC110532602 NA other downstream 432633 62623239 ~ 62627845 (+)
LOC110532619 LOC106572645 other downstream 1374972 63565578 ~ 63601970 (+)
G830755 gp182 other downstream 2123472 64314078 ~ 64316656 (+)
G830923 NA other downstream 2475142 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 2689101 64879707 ~ 64883543 (+)

Expression


Co-expression Network