G828449


Basic Information

Item Value
gene id G828449
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 62253724 ~ 62258585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU942012
gacaaggacaggaacaaaaacagagagagatataggggactaatcagagggaaaaagggaacaggtgggaaaaggggtgacgaggtagtcaggaggagacaaggaacagctgggggaaagcgggggagaaaaggtaacctaatacgaccagcagagggagacagggtgaaaggaaaggacagaaagacacaacatgacaatacatgaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU942012 True 209 lncRNA 0.49 2 62253724 62258585

Neighbor

gene id symbol gene type direction distance location
LOC110532589 cpsf3l coding upstream 47155 62196903 ~ 62206569 (+)
LOC110532588 LOC106572556 coding upstream 67465 62173452 ~ 62186259 (+)
mul1b mulan coding upstream 160178 62085008 ~ 62093546 (+)
LOC110531232 djc16 coding upstream 311084 61937419 ~ 61942640 (+)
trnaa-ugc-37 NA coding upstream 522557 61731094 ~ 61731167 (+)
LOC110532591 LOC106572559 coding downstream 68405 62326990 ~ 62340784 (+)
LOC110532596 LOC106572563 coding downstream 101216 62359801 ~ 62382657 (+)
LOC118965938 NA coding downstream 128260 62386845 ~ 62391585 (+)
klhl21 LOC106572566 coding downstream 320594 62579179 ~ 62606419 (+)
LOC110532601 NA coding downstream 357377 62615962 ~ 62619679 (+)
G828408 NA non-coding upstream 37712 62215611 ~ 62216012 (+)
G828254 NA non-coding upstream 108605 62141530 ~ 62145119 (+)
G828209 NA non-coding upstream 187703 62065660 ~ 62066021 (+)
G828205 NA non-coding upstream 190990 62055738 ~ 62062734 (+)
G828206 NA non-coding upstream 193020 62055958 ~ 62060704 (+)
G828427 NA non-coding downstream 87923 62346508 ~ 62373439 (+)
G828598 NA non-coding downstream 138206 62396791 ~ 62397015 (+)
G828832 NA non-coding downstream 312040 62570625 ~ 62570871 (+)
G828838 NA non-coding downstream 314594 62573179 ~ 62573993 (+)
G828274 NA other upstream 63118 62189182 ~ 62190606 (+)
G827039 NA other upstream 1002486 61212461 ~ 61251238 (+)
G826751 NA other upstream 1591818 60661369 ~ 60661906 (+)
G826653 NA other upstream 1690327 60563080 ~ 60563397 (+)
G826505 NA other upstream 1807190 60446030 ~ 60446534 (+)
LOC110532602 NA other downstream 364654 62623239 ~ 62627845 (+)
LOC110532619 LOC106572645 other downstream 1306993 63565578 ~ 63601970 (+)
G830755 gp182 other downstream 2055493 64314078 ~ 64316656 (+)
G830923 NA other downstream 2407163 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 2621122 64879707 ~ 64883543 (+)

Expression


Co-expression Network