G828598


Basic Information

Item Value
gene id G828598
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 62396791 ~ 62397015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU942187
cagaaatgccttctgaacTTTGgcctttcatgtgccttaatagcaaacttgtatgccagctgtaaatacgaataaaattgttaaattacgagcctagttggtttagccacagaaaaatccagcaaccttcccgctagccatgattggctgagataatgagtgggctggacatgccgggagatgagttcagattggtctgtcatgtagcacacttctgtctataac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU942187 True 225 lncRNA 0.43 1 62396791 62397015

Neighbor

gene id symbol gene type direction distance location
LOC118965938 NA coding upstream 5206 62386845 ~ 62391585 (+)
LOC110532596 LOC106572563 coding upstream 14211 62359801 ~ 62382657 (+)
LOC110532591 LOC106572559 coding upstream 56007 62326990 ~ 62340784 (+)
LOC110532593 LOC106572560 coding upstream 73108 62225784 ~ 62323683 (+)
LOC110532589 cpsf3l coding upstream 190222 62196903 ~ 62206569 (+)
klhl21 LOC106572566 coding downstream 182164 62579179 ~ 62606419 (+)
LOC110532601 NA coding downstream 218947 62615962 ~ 62619679 (+)
LOC110532602 NA coding downstream 228206 62623239 ~ 62627845 (+)
LOC110532604 LOC106572641 coding downstream 242785 62639800 ~ 62756902 (+)
LOC110532605 LOC106572639 coding downstream 365373 62762388 ~ 62789810 (+)
G828427 NA non-coding upstream 23352 62346508 ~ 62373439 (+)
G828449 NA non-coding upstream 138206 62253724 ~ 62258585 (+)
G828408 NA non-coding upstream 180779 62215611 ~ 62216012 (+)
G828254 NA non-coding upstream 251672 62141530 ~ 62145119 (+)
G828832 NA non-coding downstream 173610 62570625 ~ 62570871 (+)
G828838 NA non-coding downstream 176164 62573179 ~ 62573993 (+)
G828868 NA non-coding downstream 204278 62601293 ~ 62604968 (+)
G829013 NA non-coding downstream 483536 62880551 ~ 62881096 (+)
G828274 NA other upstream 206185 62189182 ~ 62190606 (+)
G827039 NA other upstream 1145553 61212461 ~ 61251238 (+)
G826751 NA other upstream 1734885 60661369 ~ 60661906 (+)
G826653 NA other upstream 1833394 60563080 ~ 60563397 (+)
G826505 NA other upstream 1950257 60446030 ~ 60446534 (+)
LOC110532619 LOC106572645 other downstream 1168563 63565578 ~ 63601970 (+)
G830755 gp182 other downstream 1917063 64314078 ~ 64316656 (+)
G830923 NA other downstream 2268733 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 2482692 64879707 ~ 64883543 (+)

Expression


Co-expression Network