G830383


Basic Information

Item Value
gene id G830383
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 63874898 ~ 63878760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU944165
aaaaaggtccaatgcagctgttttttatCTCAAGatcaaattatttctgggtaacaattaagtacattactaataaataaaaaaagtcaaaaagaaggtttggaactctttcttattggtctattaacataTTTACCACCTGGTAATGTCACCAGGCATTCCAACATTCCCTCCCACCAGAACagcctGACATTTCAGGTGGTATTCTCAAACAGCTCTTACTCCTAATTATCATAATTTTTACagttcaatgtcatcttggtaagcaactccactgtatatttggccttgtattttaggttattgtcctgttgaaaggtgaatttgtctcccagtgtctgttggaaagcaggctgaaccaggtttcctct

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU944165 True 371 lncRNA 0.36 2 63874898 63878760

Neighbor

gene id symbol gene type direction distance location
LOC110532631 ada coding upstream 11485 63845271 ~ 63863413 (+)
LOC110532629 LOC106572620 coding upstream 137882 63729172 ~ 63737016 (+)
LOC110532625 LOC106572622 coding upstream 158623 63710544 ~ 63716275 (+)
g0s2 LOC106572624 coding upstream 165207 63708644 ~ 63709691 (+)
LOC110532622 LOC106572625 coding upstream 179566 63648764 ~ 63695332 (+)
LOC110532638 LOC106572608 coding downstream 88412 63967172 ~ 63971893 (+)
jph2 LOC106572606 coding downstream 114396 63993156 ~ 64022233 (+)
LOC110532642 LOC105013598 coding downstream 159815 64038575 ~ 64041225 (+)
LOC110532647 LOC106572599 coding downstream 209923 64088683 ~ 64094297 (+)
LOC110532646 LOC106572598 coding downstream 220883 64099643 ~ 64110913 (+)
G830339 NA non-coding upstream 53716 63820895 ~ 63821182 (+)
G830327 NA non-coding upstream 63308 63811191 ~ 63811590 (+)
G829548 NA non-coding upstream 76040 63798551 ~ 63798858 (+)
G829543 NA non-coding upstream 81913 63792772 ~ 63792985 (+)
G829541 NA non-coding upstream 83479 63790788 ~ 63791419 (+)
G830407 NA non-coding downstream 47913 63926673 ~ 63936449 (+)
G830405 NA non-coding downstream 57787 63936547 ~ 63941083 (+)
G830422 NA non-coding downstream 70575 63949335 ~ 63949660 (+)
G830423 NA non-coding downstream 71012 63949772 ~ 63950046 (+)
G830428 NA non-coding downstream 79727 63958487 ~ 63958828 (+)
LOC110532619 LOC106572645 other upstream 277130 63565578 ~ 63601970 (+)
LOC110532602 NA other upstream 1247056 62623239 ~ 62627845 (+)
G828274 NA other upstream 1684292 62189182 ~ 62190606 (+)
G827039 NA other upstream 2623660 61212461 ~ 61251238 (+)
G826751 NA other upstream 3212992 60661369 ~ 60661906 (+)
G830755 gp182 other downstream 435318 64314078 ~ 64316656 (+)
G830923 NA other downstream 786988 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 1000947 64879707 ~ 64883543 (+)
LOC110531237 LOC106567057 other downstream 1487531 65186569 ~ 65405501 (+)
G831810 NA other downstream 1635633 65514393 ~ 65514985 (+)

Expression


Co-expression Network