G830405



Basic Information


Item Value
gene id G830405
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 63936547 ~ 63941083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU944188
aaatgaatggtggaaaaaccaTTTCCCTgcttgaccgctaggttttattcACTGAAACCTGAGAAAGTGCTTTGAACATTTGACTGTATTATAAAGGAAAGATGGTACAGTACAATAAAACCAGGAAGGGGCAACTAATATCGTCAGTTTGGTTGGTCAAAGGTGTTTTGCATCTCCTTGACTTATATGTAAATTATACCATGTGTGATCAATGACATAATGACAATAAATCCCCAAGCCATTCATGCATAGGCCACAGTACACTTCTGAAAAGGCATGTTCTGACACTTTGCAGTGTAACTGAGTCACACTCAGTTTGCAGATGCTGTCAGGTGTTTTCCTAGTTTTTCCCAGGTGGTTCCCATGTGTTTTTCAGGTGAAAGTCCAGTGTTGTCCTCTGACAGAGTCTGAGGCTGCCCTCCACACCTTTCCACTATCCTGGCTACAATTCCACCCAGATTCACTCTGACAAAGTGTTTTACAGTGCTTGACACTCTAACAGGACTCCTCCTGAAATGTGTTGTCATGATTACATTCAGCCCACTGCCTATAGCGGCCCTTCATTCATCATGTTATGCTACACTCCGAAGCTTTCACATGGCAGGCTGACATCAGTCTCATCAGTCAGTCTCAGCTTATTATGGGGCCCTTTTTAACAACCTTCATATCGTCGCCACACCTCCTAGATTGCAGTCGTGTCAAAAAAATGGCGAtgatattttctacattgaatggACCTGCCATAAGAGAAACCCTCTGCAGTGTGTATTGCATGCTACAGTTTAAACAAAGTCAACAGTCGGTGTGAGCTCCACCATAATGCACCGAAACCGTGAGATGATAAAAGACAGAAACTGTGTACTCACCACCAGCGAATGGAAACTCCATGCTTGTACTGACTTGTGAGTTTACATtaaccatctctctccctgtttctttctTATGTGTTTTCTTTTTCTTCTGTATTCCCAAAGTTCTAGGGTTTAAAATATGGAAGTTAGCCACTGGCTGCGTTATAATGAGGAAGGTGGTGTTGGTGCAAGGTAAGGCCCCAGCATTAGGTAGGTACTTCTAGCTGTTATCTTATTGATTTTTCTAATCTGAGAAAAATGTGGGTGGAGATGTTAAACAGTAACCAGGCTCATAAAGAGACCACGTATATACGGCAGGAAGCTATCGCTATAGCAACAAGATGGTAGAAACAAAAAGCCTGTCTGTAGGCAAGTTTATTTTATTAATGTGCATTGagtaaaggaaggaaggaagaacagGAGTAAATGAAGTAACAAAGAACTCCCCTGCAAGAGGGAAGGTGGAAAAAAAGGgacatgaaagagagagaggacttgaGAGGGTGTCACCTCCCCACCTCAGGATGGTGAGTGTGAATTAAGTTTCTAATGTTTTGGTTGAGAAGTCCTCCTATTCTCTCCAGGTTACGCAATGAATGAACCGAAAAACACTGCACAAATACAATAACATACAAATATCCCTGCGAATAGCAGTAAGTTGATAACATGGTACAGGTCAAGTTCTCACACACTGATATTGTTACAAAATAGTTCATTCGTTTACCTTGTGGGAACTTTCACTTTTGGTTGCATGTATGGGTCAGTTGCTGTCCTGAAATGGAATTTCCCATGTTGGCCATTTCCCACAGAATCAGATATCCTCTGAAAATGTTGAAATGTTTGTTGATTGAGTAGGAGTCGTATAATTTCACTCTTCAAATATATTTTACAAGCATGAGCATGTAAAGAGGGGTGTATGCAGTACATATTAAGACTTTATGGTAGAATATTGGGTTATCGGTGTGAACCATTTTGGACATGGAATAAAACATACAAATCATATTTTCATCCCAGTCTCTCATTGTTAATGGACATAAACCAATTGAATCTCATAATTATGACCATAAAAGCCTCATTAGAGTCCAGTTTAATTGTGGAGATAGACTCTCTGCAGATGAATATGGAGAATAAATTAGGTGAAAACCAGTAGAGTGGATTCCCTAGCCCCCCTTACCCTCCCCTAGCCTCACCTTTTCTAGCCTCCCCTAGCCTCTCCTAGTCTCCCCTAGCCCCCTTAGCCTCACCTAGCCTCCCCTAGCCTCACCTTTTCTAGCCTCCCCTAGCCTCTTCTTGTCTCCCCTAGCCCCCTTATCCTCTCCTAGCCTCACCTTTTCTAGCCTCCCCTAGCCTCTCCTAGCCTCCCCTAGCCCCCTTAGCCTCCCCTTAGCCTCCCCTAGCCTCTCCTAGCCTCCCTTAGCCTCACTTCCCCTAGCCTCCCCTAGTCTCTCCTAGCCTCCACTAGACTCCTAGTTAAATGAAAACAGATGCAGGCCAGGGGACATTTGAGATAACATGCACATGTAGCCAGTCATAGTTTCCAATGTATAGTATCTATGCTGACATGCTGTGTTTAGGTGTACATTAATATTAAGATGGGATTGGCAAGGAAGAAATAGGAAGAAAATCTCCTTTTAATACAGATAAGTGAAAAAGCAACCTGGAACTGTAAGGTTTAAACACCCACTACTGAGTTAAACTCCTTTCTTTTTTATTCAAATAATTATTGACAGTTATTTCACATTCAGGCCAATCATGAGCTGTAATAAGTGTATTACAatgttataatttttttttaaaaattggtCTACAAGAGAACAAGTAACCAACATGATCAATGTCTCTAAATCTACAGTAAACAAgtgttataaaataataataataaaaaacagtAACTATAAAAGTGCTTATTTTTAGCTAAAAGCAGTGCAAACAATTTGTGGATTTATCAAACACGTTGGCATAAGCatacaaatacactacatgaccaaaaatatgtggacaccttctcgtcaaacatctcattccaaaatcgtgggcattaatatggagttggtcccccctttgctgctataactgcctccactcaactaggaaggctttccactagatgttggaacattgatgcaaggacttgcttccgttcagccacaagagcattagtgaggtcgagcactgatgttgggcaattaggcctggctcgtagtcggtgttccaattcatcccaaaggtgttcgatggggttaaggACAGGGCTATGTGCAGTCaattcaagttcttccacaccaatctcaacatactatttctgtatggacctagcTATGTGCacgggtgcattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaaagttggaagcacagaattgtctagaatgtcattgtatgctgtagcattaagatttctctagactggaactaagaggcctatcCCGAACCATGacaaacagtcccagaccattattccccctctaccaaactttacagttgacactatgcattgggggcaggtagcgttctcctggcatcgcGATTCATCACTCtggagaacacgtttccactgctccagagtccaatggcggcaagctttacacccctccagctgacacttggcattgccattggtgatcttaggcttgtaagCGGCTAATCGGccaaaacccatttcatgaagctccagacgaaccgTTCTtgtcgttgcttccagaggcagtttggaacttggtagtgagtgttgcaatcgaggacagacaACTTTTACGATTTAAACTCgatacgcacttcagcactcgatgatcccattctgtgagcttgtgtggcttacaaCTTCCCTGTTGatgctcctagacgttttcacttcacaataacagcacttacagttgaccgggaaaGATCTATCAGGGCATACATTTCAAgacctgacttgttggaaaggtggcatcctatgacggtgccacattgaaagtcaatgagagattgcatgactgtgttcttgattttatacacctgtcagcaatatgtgtggctgaaatagagaATCCACtgttttgaaggggtgtccacatacttttgtatatatagtgtacattgcACTCATCTTCTTAACATTTTCAAAAAAGGCCATAATCAAATGTATACAACAGAAGTACTGTCTGGTTTTTGGTAGCTGGGTTCTTTCTGTGTCATGGCGAGAAAATGGAGCTTTACAACCCAAGAGTTTACATAGAGTTCACAACATCATGACCGAGGGGGAAAAACATTATTTCCCTAACATCCAGTGGATGGATCAAACATTAGTTTATGATAAACACAAAAATAGTGGTACTAGAATTGAATCGCTGAAAAAAGCAGGTCTTGTGCTTTGATTCGTTTTTTATGTTTAGAAATCCTTCACCTTTCTTTCACACACCCTCTCTTGCAGTTGTTTGTTGCTGAGATGAATGGAACAGAATAATTGACCAGAAACAATGAACTCTAAAAAGTCTTCCATTATAACAGGGAAAGTATGACTGATGTCTTTCTAATACCTTTTTCTTTTCTTGGCTTTGGCTTTTGAACCACTGAAGGAACACTGCTTTCTGTTACATGAACCTCCATATTTTGATGGACAGGCAGAGCACGGTTTGCCACTCTTATAGGGAGCCTCTCCAACCCAG

Function


NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA


RNA id representative length rna type GC content exon number start site end site
TU944188 True 4537 lncRNA 0.42 1 63936547 63941083

Neighbor


gene id symbol gene type direction distance location
LOC110532631 ada coding upstream 73134 63845271 ~ 63863413 (+)
LOC110532629 LOC106572620 coding upstream 199531 63729172 ~ 63737016 (+)
LOC110532625 LOC106572622 coding upstream 220272 63710544 ~ 63716275 (+)
g0s2 LOC106572624 coding upstream 226856 63708644 ~ 63709691 (+)
LOC110532622 LOC106572625 coding upstream 241215 63648764 ~ 63695332 (+)
LOC110532638 LOC106572608 coding downstream 26089 63967172 ~ 63971893 (+)
jph2 LOC106572606 coding downstream 52073 63993156 ~ 64022233 (+)
LOC110532642 LOC105013598 coding downstream 97492 64038575 ~ 64041225 (+)
LOC110532647 LOC106572599 coding downstream 147600 64088683 ~ 64094297 (+)
LOC110532646 LOC106572598 coding downstream 158560 64099643 ~ 64110913 (+)
G830407 NA non-coding upstream 98 63926673 ~ 63936449 (+)
G830347 NA non-coding upstream 13616 63826603 ~ 63922931 (+)
G830383 NA non-coding upstream 57787 63874898 ~ 63878760 (+)
G830339 NA non-coding upstream 115365 63820895 ~ 63821182 (+)
G830327 NA non-coding upstream 124957 63811191 ~ 63811590 (+)
G830422 NA non-coding downstream 8252 63949335 ~ 63949660 (+)
G830423 NA non-coding downstream 8689 63949772 ~ 63950046 (+)
G830428 NA non-coding downstream 17404 63958487 ~ 63958828 (+)
G830430 NA non-coding downstream 22352 63963435 ~ 63963682 (+)
G830445 NA non-coding downstream 51543 63992626 ~ 63992844 (+)
LOC110532619 LOC106572645 other upstream 338779 63565578 ~ 63601970 (+)
LOC110532602 NA other upstream 1308705 62623239 ~ 62627845 (+)
G828274 NA other upstream 1745941 62189182 ~ 62190606 (+)
G827039 NA other upstream 2685309 61212461 ~ 61251238 (+)
G826751 NA other upstream 3274641 60661369 ~ 60661906 (+)
G830755 gp182 other downstream 372995 64314078 ~ 64316656 (+)
G830923 NA other downstream 724665 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 938624 64879707 ~ 64883543 (+)
LOC110531237 LOC106567057 other downstream 1425208 65186569 ~ 65405501 (+)
G831810 NA other downstream 1573310 65514393 ~ 65514985 (+)

Expression



Co-expression Network