G830408 (LOC106572604)


Basic Information

Item Value
gene id G830408
gene name LOC106572604
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 64024602 ~ 64032351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU944191
aaaAAAAgacaaatcaattttaatcccagtttgtaatgcaacaaaatgtggaaaaagtcttgAATATTTTCTGTAGGCATTCCattacattttccacattttgttatgttacagccttattctaaaattgcttaaatacatgttttccttatcaatctacacacaatatcccataatgacaaagtgaaaacaggttttcagaaatgtttgcaaattaaaGCAGCAATACcttatctacataagtattcagaccctttgctatgagactcgaaattcagctcgggtgcatcctgtttccattgatcatccttgagatgtttctacaacttgattggagtctacctgtggtaaattcaattgattggacaggatttggaaatgtacacacctgtctatatgaggtcccacagtttattgtgcatgtcagagcaaaaatcaagctatgaggtcgatggaattgtctgtagagctccgacacaggattgtgtcgaggcacaaatatggggaagggtaccaacaaatttctgcagcattgaaggtccccaagaacacagtggcatccatcattcttaaatggaagaaatgtgGAACCCCCAAGACTCATCCtcttccaaactgagcaatcaggggagaagggccttggtcagggaggtgaccaagaacctgatggtcactctgacagagcttcagagttacTCTgtagagatggaagaaccttccagaaggatgaaaccaagattgaactatttggcctgaatgccaagtagtTCTGGGACCATTCCTACTGTGAatcatggtggttgcagcatcatgctgtggggatgtttttcacctgcagggactgggagactagccaggaaAGATGAAagcagcaaagtacagagagatcctttatgaaaaccttcattttcaatacatttgtaaaaatttttatctaaaaacctgtttttgcattgtcattatggggtattgcatgtagattgatgagggggggacttaatccattttagaataaggctgtaacatgacaaaatgtggaaaaagacaagggatctgaatactttccgctTGCAATCTATATGTTATTTTCTCCACGGGGCACATTCTTGCACATGACTAATGATCTACAGTACATATTGTTGTTTTCATCCTTCTGGTCTCATGACATCAGACCCACGTGAAGCCCCTTGCTCATATATGTCTATTTTATCAAAATCGGGGGATAGCTTTGACCGGGACCTGGACACAGATCCAAgcaactgtcaagccaacaccttaactGTTATGCCACAAGGTTCAAACCTCTTGAAGAGGTTGCTAGGCAGGTAacaacaatgtaattgtaaacgAGCCTATATCATGTTTTGCATCTGCAGTCGTCCTGTTTAGGTCCAATCTAGACACATTGGGAACAGTATTTTTAAACCccacctgtcctgtcccacagCTTGACAGATCTCCCCCATGACAGGGCAGGGTATGAATACCAGGACCTATTTTAGATCAGGGCTGTGAACTGGGACTGGGCTCTTCTCAGGCCTAGCTGGCTTTCACATTGGTAAATTGGAGAGTACATTTCACAGTTCACATCTCCAATTCACAATGAATGTAGATAACATAGAATGTAATATTCTGCATGTATTATTTGTTTGCATCCTGAGGGTGAGAAAATGCAGAGTCTACGTCTACCCTCTATGCAGTTATGGCTGTGATTTTCTGAGTGTGTTGTTTTAATACTACCTTCATGATATTTTGTAGCGTTCAGGAAAGTATTGATTTGTTGGGGTATGTATTGGGAATTGTTGCCCGTTCATGTTCACAGAAGGAAATGGACATGTATTTATTGCACAACACTGCCCTCTAGACATTAAAGTGGTTAGGTAGCAAAGCAAACTAACAAACACAAGCACCACTCTTAAAGAAAAGGTCTCATGACAAAGTTCAATACTGAAATTATTGAAACTTTAAATTCTTTAAGTTAGTAGTTAAAACAAATAATTTCTAGATGATTATGAATCCATAATAGACAGCAGCGCtgagggaggacagctcataataatgtttatcagtggaggctgctgaggggaggacagctcataataatgtttatcagtggaggctgctgaggggaggacagctcataataatgtttatcagtggaggctgctgagggaggacagctcataataatgtttatcagtggaggctgctgaggggaggacagctcataataatgtttatcagtggaggctgctgaggggaggacagctcataataatgtttatcagtggaggctgctgagggaggacagctcataataatgtctggaatggagtcaaaggAATGGTATCAAGcacgtggtttccatggtttccatgtggttgacaccattccattgactccattccatccattattatgagctgtcctcccctcagcagcctccactgataaacATTATTTGAAATTCTGTGACTGTTAACAGTGTTCCTAGAAACCAATGAATTTGTCTAAGCCACCTATATAAGAATACACATAAGGGAGAGGATTATAAACTAATGGTATGAACACCTCTAAAGGGAAACCTGAAAATTACGACAAGTAAAATTGTAGTTTTCCATACAATGTACATTTCTTGTCAAAATTAAAGTGCTTTTTGACTGAGGTTAGGAGTGTAGTGGATGGAAATAATAGAACATGTGGATCTATGAAAAGAGAAATGAAAAGATAAAGGTGGATATATGGAAAAGAGAAATGAAAGAAGAGGGTGATAAAGtttgaaagacagagaaagaaagacagccaTTTCTAATACTCTTCCCCGTCCTCATCTCCTTCACCGCTGTCACGTCCCACCTCTTCATAATCCTTCTCCAGGGCTGCCATGTCCTCTCTGGCCTCAGCaaactctccctcctccatacccTCACCCACATACCAGTGCACAAAGGCACGTTTGGCGTACATCAGGTCAAACTTGTGGTCAAGACGAGCCCAGGCCTCTGCCACAGCAGTGGTGTTGCTCAGCATGCACACAGCCCTCTGGACTTTGGCCAGGTCTCCACCAGGGACCACAGTGGGAGGCTGATAGTTGATGCCAATCTTGAAACCAGTTGGACACCAGTCAACAAACTGAATGGAACGTTTAGTCTTGATGGTGGCAATGGCAGCATTGACATCTTTGGGTACCACGTCACCACGGTATAGAAGGCAGCATGACATGTACTTTCCGTGACGAGGGTCACATTTCACCATCTGGTTGGCTGGTTCAAAGCAGGCATTGGTGATCTCAGAGACAGTTAACTGCTCATGGTAAGCCTTCTCTGCAGAAATAACTGGGGCATAGGTGGCCAGAGGGAAATGGATACGGGGGTAGGGCACCAAGTtggtctggaactctgtcagatcAACATTGAGGGCACCATCAAATCGAAGGGAAGCAGTGATGGAGGAAACGATCTGGCTAATGAGCCTGTTGAGGTTGGTGTAAGTAGGACGCTCAATGTCGAGGTTCCTACGGCAGATGTCATAGATAGCCTCATTATCCACCATGAAGGCACAGTCAGAGTGCTCTGGGTGGTGTGGGTGGTCAAGATAGCGTTGTAGGTCTCCACCACAGCTGTGGACACCTGGGGAGCTGGGTAGATGGAGAACTCCAGCTTGGACTTCTTGCCGTAGTCAACAGACAGGCGCTCCATCAGCAGGGAAGTGAAACCAGAGCCAGAGCCACCTCCAAAGCTGTGGAAAACCAGGAAGCCCTGAAGGCCTGTGCACTGGTCAgCAGTTTGCGGATCCTGTCCAGTACCAGGTCGATGATCTCTTTGCCAATAGTGTAGTGTCCACGAGCGTAGTTGTTGGCAGCATCCTCTTTGCCAGTGATGAGCTGTTCAGGATGGAATAACTAGCGGTAGGTCCCAGTGCGCACCTCATCTGAGGAGAGAAAA

Function

NR:

description
LOW QUALITY PROTEIN: tubulin alpha-1C chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU944191 True 3944 lncRNA 0.44 3 64024602 64032351

Neighbor

gene id symbol gene type direction distance location
jph2 LOC106572606 coding upstream 2369 63993156 ~ 64022233 (+)
LOC110532638 LOC106572608 coding upstream 52709 63967172 ~ 63971893 (+)
LOC110532631 ada coding upstream 161189 63845271 ~ 63863413 (+)
LOC110532629 LOC106572620 coding upstream 287586 63729172 ~ 63737016 (+)
LOC110532625 LOC106572622 coding upstream 308327 63710544 ~ 63716275 (+)
LOC110532642 LOC105013598 coding downstream 6224 64038575 ~ 64041225 (+)
LOC110532647 LOC106572599 coding downstream 56332 64088683 ~ 64094297 (+)
LOC110532646 LOC106572598 coding downstream 67292 64099643 ~ 64110913 (+)
LOC110532648 LOC106572596 coding downstream 102337 64134688 ~ 64166582 (+)
LOC110532654 LOC106572591 coding downstream 248221 64280572 ~ 64308563 (+)
G830445 NA non-coding upstream 31758 63992626 ~ 63992844 (+)
G830430 NA non-coding upstream 60920 63963435 ~ 63963682 (+)
G830428 NA non-coding upstream 65774 63958487 ~ 63958828 (+)
G830423 NA non-coding upstream 74556 63949772 ~ 63950046 (+)
G830458 NA non-coding downstream 18470 64050821 ~ 64062498 (+)
G830471 NA non-coding downstream 54711 64087062 ~ 64087298 (+)
G830490 NA non-coding downstream 80195 64112546 ~ 64112988 (+)
G830492 yo84 non-coding downstream 82923 64115274 ~ 64115597 (+)
G830495 NA non-coding downstream 85035 64117386 ~ 64117880 (+)
LOC110532619 LOC106572645 other upstream 426834 63565578 ~ 63601970 (+)
LOC110532602 NA other upstream 1396760 62623239 ~ 62627845 (+)
G828274 NA other upstream 1833996 62189182 ~ 62190606 (+)
G827039 NA other upstream 2773364 61212461 ~ 61251238 (+)
G826751 NA other upstream 3362696 60661369 ~ 60661906 (+)
G830755 gp182 other downstream 281727 64314078 ~ 64316656 (+)
G830923 NA other downstream 633397 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 847356 64879707 ~ 64883543 (+)
LOC110531237 LOC106567057 other downstream 1333940 65186569 ~ 65405501 (+)
G831810 NA other downstream 1482042 65514393 ~ 65514985 (+)

Expression


Co-expression Network