XLOC_027263 (nup37)


Basic Information

Item Value
gene id XLOC_027263
gene name nup37
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 17327704 ~ 17377658 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053682
tttctctttttttttttttttttgacgaacCACGTTGTCAACCAATATTGGCTCTTTTGTTCACGTGCATAGAGCTGTCgaagttacagtaaacaccaCTTGGTGGCGCTCAAATACTAATGACGAAGATGCAAGATGATAGTGGAGCTGCTCATTTAATTGGTGTCTGACACAACGTTTTTGTGTGATAAACGTGATAGTGACTGCAAAGTGTCTGGTTAATATGGAGAGGAGTTCCAGGTCAAATAGAATTCGATGACTTTGAATAAGGTGGGACGATTGCCGCCtttggaggatgagggagctctcagatttcatccaaCACATCTTATTTTGTACTCCAAATACGAACAAAGGCCTTAGGAATTTGGAAAAAACATgatgGTTAGGCAAACCCATTTCTTCTCAACAATAAAGATCAATTTGATGGAAGATGCCAGATGATACAGTCCGCTCTGCAAGCTACACAGTGCCCTGCGAGGACTATGTCCACGTAGTGGAGTTCAGTCCATATGATTGTGGCTCACCTGCGTCACTCTTGGCATACGGAGGAAACAAGTATGTGGTCGTCGGCACTTGTCGTTTTAAGGAGGAAGACGCAGAGGTGGAGGGTGTAGAGTTTAACTCATTACAGGTGTTCATGCATGGAGTACGCGTGGATGCCATCGCATGGAGCCCTGAAACCCATCTAGACAAGCTCCCTCCAGTCATCAGGTTTTCCACTGCAGCAGCTGACAGAAAAATCAGGCTGTGGACATCGGATCTCCAAAACAGTTGTGATGTGAAGGTGATGGAAGGCCACACCAGCTACATCAATCATTTAGTGTTTGAACCTGCAGAAGGAAAGCAAATAGCCTCTGTCAGCGATGACCACACTTGCAGAGTTTGGGACCTTGATGGTAATgaaaccacctcattcaggctTCGTTCCCCTGGTGTAAGTGTCTGTTGGCACCCTGAAGACAACTGTAAGTTGATGGTGGCAGAGAAGAAGGGCACAATACGGTTCTATGACCTTGTCACACAGCATGCCATTCTGTCACTGGACAGCGGGCAGGTGCCACTCATGTCAGCTGACTGGTGTCTCACAAACACTATAAAGGTTGGAGCTGTGGTGGCCAATGATTGGGTTATCTGGGACATTACACGGTCCAGTTATCCACTCGAGAAAAGACCCGCACATGTTGACAAGGCGAGACATTTCAGATGGTCAAGGGCAAATGAGAATCTTTTTGCTACCACAGGCTACCCAGGAAAAATCAACAGTCAGTTACTGGTGCATCATCTTGGCCATCCACagCCTGTCATGCTTGGTTCGGCATCTGTGGGGGCTGGACTGAGCTGGCACAGGACCCTGCCTCTTTGTGTTATTGGTGGGGATCGAAAGTTGTTCTTCTGGATGACGGAGATGTAAATTGGTTCGAAGTCAACTGGAGAGTCTTTCTGTTTTCCTTTTTCAGTAAATAAAGTCATATTTTT
>TCONS_00053683
tttctctttttttttttttttttgacgaacCACGTTGTCAACCAATATTGGCTCTTTTGTTCACGTGCATAGAGCTGTCgaagttacagtaaacaccaCTTGGTGGCGCTCAAATACTAATGACGAAGATGCAAGATGATAGTGGAGCTGCTCATTTAATTGGTGTCTGACACAACGTTTTTGTGTGATAAACGTGATAGTGACTGCAAAGTGTCTGGTTAATATGGAGAGGAGTTCCAGGTCAAATAGAATTCGATGGTGAGTAAATTTTTCCACTTAATATTATTTCATGGCATGTAAGTTAATGAAATACCATCCAAAGTCAGGAAGTGATTTTCGAAAATCGCCGACGATAAGCTTGAGCGAAAACCGTCCCGGTTAGGCAAACCCATTTCTTCTCAACAATAAAGATCAATTTGATGGAAGATGCCAGATGATACAGTCCGCTCTGCAAGCTACACAGTGCCCTGCGAGGACTATGTCCACGTAGTGGAGTTCAGTCCATATGATTGTGGCTCACCTGCGTCACTCTTGGCATACGGAGGAAACAAGTATGTGGTCGTCGGCACTTGTCGTTTTAAGGAGGAAGACGCAGAGGTGGAGGGTGTAGAGTTTAACTCATTACAGGTGTTCATGCATGGAGTACGCGTGGATGCCATCGCATGGAGCCCTGAAACCCATCTAGACAAGCTCCCTCCAGTCATCAGGTTTTCCACTGCAGCAGCTGACAGAAAAATCAGGCTGTGGACATCGGATCTCCAAAACAGTTGTGATGTGAAGGTGATGGAAGGCCACACCAGCTACATCAATCATTTAGTGTTTGAACCTGCAGAAGGAAAGCAAATAGCCTCTGTCAGCGATGACCACACTTGCAGAGTTTGGGACCTTGATGGTAATgaaaccacctcattcaggctTCGTTCCCCTGGTGTAAGTGTCTGTTGGCACCCTGAAGACAACTGTAAGTTGATGGTGGCAGAGAAGAAGGGCACAATACGGTTCTATGACCTTGTCACACAGCATGCCATTCTGTCACTGGACAGCGGGCAGGTGCCACTCATGTCAGCTGACTGGTGTCTCACAAACACTATAAAGGTTGGAGCTGTGGTGGCCAATGATTGGGTTATCTGGGACATTACACGGTCCAGTTATCCACTCGAGAAAAGACCCGCACATGTTGACAAGGCGAGACATTTCAGATGGTCAAGGGCAAATGAGAATCTTTTTGCTACCACAGGCTACCCAGGAAAAATCAACAGTCAGTTACTGGTGCATCATCTTGGCCATCCACagCCTGTCATGCTTGGTTCGGCATCTGTGGGGGCTGGACTGAGCTGGCACAGGACCCTGCCTCTTTGTGTTATTGGTGGGGATCGAAAGTTGTTCTTCTGGATGACGGAGATGTAAATTGGTTCGAAGTCAACTGGAGAGTCTTTCTGTTTTCCTTTTTCAGTAAATAAAGTCATATTTTTCATGCGC
>TCONS_00053685
GATCACGTGACCAGAAAGCGCGCTGAGAACAAGCAGCTCGTGTGTGTTTTCATGCTGCAGAGATCACTCCGCCAGACTGCCTTCTGAGTTCGTACATGTGTAAAAGTTATTGCAGGTTAGGCAAACCCATTTCTTCTCAACAATAAAGATCAATTTGATGGAAGATGCCAGATGATACAGTCCGCTCTGCAAGCTACACAGTGCCCTGCGAGGACTATGTCCACGTAGTGGAGTTCAGTCCATATGATTGTGGCTCACCTGCGTCACTCTTGGCATACGGAGGAAACAAGTATGTGGTCGTCGGCACTTGTCGTTTTAAGGAGGAAGACGCAGAGGTGGAGGGTGTAGAGTTTAACTCATTACAGGTGTTCATGCATGGAGTACGCGTGGATGCCATCGCATGGAGCCCTGAAACCCATCTAGACAAGCTCCCTCCAGTCATCAGGTTTTCCACTGCAGCAGCTGACAGAAAAATCAGGCTGTGGACATCGGATCTCCAAAACAGTTGTGATGTGAAGGTGATGGAAGGCCACACCAGCTACATCAATCATTTAGTGTTTGAACCTGCAGAAGGAAAGCAAATAGCCTCTGTCAGCGATGACCACACTTGCAGAGTTTGGGACCTTGATGGTAATgaaaccacctcattcaggctTCGTTCCCCTGGTGTAAGTGTCTGTTGGCACCCTGAAGACAACTGTAAGTTGATGGTGGCAGAGAAGAAGGGCACAATACGGTTCTATGACCTTGTCACACAGCATGCCATTCTGTCACTGGACAGCGGGCAGGTGCCACTCATGTCAGCTGACTGGTGTCTCACAAACACTATAAAGGTTGGAGCTGTGGTGGCCAATGATTGGGTTATCTGGGACATTACACGGTCCAGTTATCCACTCGAGAAAAGACCCGCACATGTTGACAAGGCGAGACATTTCAGATGGTCAAGGGCAAATGAGAATCTTTTTGCTACCACAGGCTACCCAGGAAAAATCAACAGTCAGTTACT
>TCONS_00053686
GAACAAGCAGCTCGTGTGTGTTTTCATGCTGCAGAGATCACTCCGCCAGACTGCCTTCTGAGTTCGTACATGTGTAAAAGTTATTGCAGGTTAGGCAAACCCATTTCTTCTCAACAATAAAGATCAATTTGATGGAAGATGCCAGATGATACAGTCCGCTCTGCAAGCTACACAGTGCCCTGCGAGGACTATGTCCACGTAGTGGAGTTCAGTCCATATGATTGTGGCTCACCTGCGTCACTCTTGGCATACGGAGGAAACAAGTATGTGGTCGTCGGCACTTGTCGTTTTAAGGAGGAAGACGCAGAGGTGGAGGGTGTAGAGTTTAACTCATTACAGGTGTTCATGCATGGAGTACGCGTGGATGCCATCGCATGGAGCCCTGAAACCCATCTAGACAAGCTCCCTCCAGTCATCAGATGTGGAATTATGATGATCTATGGAAGCCGCACAGGTTTTCCACTGCAGCAGCTGACAGAAAAATCAGGCTGTGGACATCGGATCTCCAAAACAGTTGTGATGTGAAGGTGATGGAAGGCCACACCAGCTACATCAATCATTTAGTGTTTGAACCTGCAGAAGGAAAGCAAATA
>TCONS_00053687
GTTAGGCAAACCCATTTCTTCTCAACAATAAAGATCAATTTGATGGAAGATGCCAGATGATACAGTCCGCTCTGCAAGCTACACAGTGCCCTGCGAGGACTATGTCCACGTAGTGGAGTTCAGTCCATATGATTGTGGCTCACCTGCGTCACTCTTGGCATACGGAGGAAACAAGTATGTGGTCGTCGGCACTTGTCGTTTTAAGGAGGAAGACGCAGAGGTGGAGGGTGTAGAGTTTAACTCATTACAGGTGTTCATGCATGGAGTACGCGTGGATGCCATCGCATGGAGCCCTGAAACCCATCTAGACAAGCTCCCTCCAGTCATCAGGTTTTCCACTGCAGCAGCTGACAGAAAAATCAGGCTGTGGACATCGGATCTCCAAAACAGTTGTGATGTGAAGGTGATGGAAGGCCACACCAGCTACATCAATCATTTAGTGTTTGAACCTGCAGAAGGAAAGCAAATAGCCTCTGTCAGCGATGACCACACTTGCAGAGTTTGGGACCTTGATGGTAATgaaaccacctcattcaggctTCGTTCCCCTGGTGTAAGTGTCTGTTGGCACCCTGAAGACAACTGTAAGTTGATGGTGGCAGAGAAGAAGGGCACAATACGGTTCTATGACCTTGTCACACAGCATGCCATTCTGTCACTGGACAGCGGGCAGGTGCCACTCATGTCAGCTGACTGGTGTCTCACAAACACTATAAAGGTTGGAGCTGTGGTGGCCAATGATTGGGTTATCTGGGACATTACACGGTCCAGTTATCCACTCGAGAAAAGACCCGCACATGTTGACAAGGCGAGACATTTCAGATGGTCAAGGGCAAATGAGAATCTTTTTGCTACCACAGGCTACCCAGGAAAAATCAACAGTCAGTTACTGGTGCATCATCTTGGCCATCCACagCCTGTCATGCTTGGTTCGGCATCTGTGGGGGCTGGACTGAGCTGGCACAGGACCCTGCCTCTTTGTGTTATTGGTGGGGATCGAAAGTTGTTCTTCTGGATGACGGAGATGTAAATTGGTTCGAAGTCAACTGGAGAGTCTTTCTGTTTTCCTTTTTCAcaTGTTCAAGGCAAACAAAGGCCAGCCAACTGATAGAACCTCATTTACCCTGAACTCAATGAATTCCAGCACAGAGTGACCTGGTTGCTCGCTTTGTGGTTTCGCCTAGAGGATGATTTGGCATGTGCTGGGTCTGATGTGGAGGAATATGTTGTAACCTGGTAGCCTAATCTTTTAGCATGAATGGAACAGTTGCGTAGTTGTTCCTACACCATCTGTAGAGCAACCACAACCTGTCAATCTGTTAAAGGTTGTGCTAATCCATTAAACGCTCTCTTTTCCTGTTGGAGCCAAAGTAGGAAAGATGACTCATTTATGATACATGTTTTGAATATCAGCATGGTTGTGATTAGTCTGTAGCCACAGGCTGACAGGTAGTCAGAGCAActgagttttttatttatttaatttcaatgttcagcaaaaaataaataaaatctaaaatggtcttttaaaaaaagttgttaaaTTGTCAGACATTAAGCTAAGATGGCAACACTTGCACATGCAGTGGTGTGGAAAAGTTTTAGCCCCTTACGGATTTTTATGTTTGTCACACTGTGATGTTTCAgatcatatttcattcattcattcattttcttttcggcttagtccctttattaatcaggggtcgccacagcaaaatgaaccgccaactaatccagcatatgtttcacgcagttccagttgcaacccatcactgggaaacaccaacattggcttacccaattcacccataccacatgttttttgaaCTTGTggagagcacccagaggaaacccacccgaacaaggggagaacatgtaaactccacacagaaatgccaactgacccagccagggctcaaaccagcaaccttcttgccagtgctacccactgtggcaCCACGCTGCCCCTTCAAATCATCAAGCAAATTAAAATATCAGTCAAAGAGAAGAAGTAAATGCATGCAGATttgaaatgaaggtttttatcATTAATGGAAAACAAAGTAAAATGGTTTGTTCCTAATCCTAACGACTAATTGGGCCATCcttagcagcaacaacaacaatcaaGCACTTTCGATAAATTGCATTGAGTCTGTTACAGTGTTTTGGCCCCCTGgcctttgcagaattgttgtaattcagccacattaaAGGGATTTTGAGCATGAATTGCATTTTTAAGGTGCCACAGCATCttaattggattcaagtcaggattttgactaggccactccaaagtcttcattttgtttttctttagccATTCAGAAACTTGGGATTTTGTTtcctcttaataataaaaacctttcttTAAAAACTACTAGGTGTGtatacttgtgttatctttgactaatattgaAATTTGTTTGaagatctgaaacattaaaatgtGACAAATAGGCAAATAAAATCAGAAAGGAATCAATTGTTCACACTATTGTATTTTAGTAGCACAcaggcattttctttttaaagtgaATTATCACTGAAACTAATTATTGATCAACACAGTCCTTTTTGATGCCACCTACTGAATTTAACCTGCAGAAAGTGTCAAAAGGAAATATTCCATGTTCTTACTATAATCTATGATATTTGCATGTTTAATACAGTTTTTTCTAACGTTGTACACCATTTTGCAACATAtttgcaaattaaaaatgtaaaacagaccTGTATCATCGTCATCTGTAACATCTGCATTTCATCTGTTTCTGCCGAACTGGAAAACTGGAG
>TCONS_00053688
gaactcctccacaaTAAATCACCTTACGACATTAACATGAGCAGTTTTGCTAGCTAAATCCATGACATAATACAGGAGTGAATTAAACTGTCTGTAAATGATGTGTTTTGCCTGCAGTTATCCACTCGAGAAAAGACCCGCACATGTTGACAAGGCGAGACATTTCAGATGGTCAAGGGCAAATGAGAATCTTTTTGCTACCACAGGCTACCCAGGAAAAATCAACAGTCAGTTACTGGTGCATCATCTTGGCCATCCACagCCTGTCATGCTTGGTTCGGCATCTGTGGGGGCTGGACTGAGCTGGCACAGGACCCTGCCTCTTTGTGTTATTGGTGGGGATCGAAAGTTGTTCTTCTGGATGACGGAGATGTAAATTGGTTCGAAGTCAACTGGAGAGTCTTTCTGTTTTCCTTTTTCAGTAAATAAAGTCATATTTTTCATGC
>TCONS_00053689
GATAATAATCTGCAGTCCCATTCCTAACCCTACAGGGTAGCTTCCTCCACTCGACCATGACGCATGTGTGGTGGGGGAGACAGACACAGTGCTTTTTGTGCTTCAACAGTTGATCCCTGAAGATGAAGACAAGTATGGGAAACTAAAGTGCATAAGAGAACACAAAACTCTCTAAGCGGCACACAAGGTTCCTCTCAGcaTGTTCAAGGCAAACAAAGGCCAGCCAACTGATAGAACCTCATTTACCCTGAACTCAATGAATTCCAGCACAGAGTGACCTGGTTGCTCGCTTTGTGGTTTCGCCTAGAGGATGATTTGGCATGTGCTGGGTCTGATGTGGAGGAATATGTTGTAACCTGGTAGCCTAATCTTTTAGCATGAATGGAACAGTTGCGTAGTTGTTCCTACACCATCTGTAGAGCAACCACAACCTGTCAATCTGTTAAAGGTTGTGCTAATCCATTAAACGCTCTCTTTTCCTGTTGGA

Function

symbol description
nup37 Acts upstream of or within heart development. Predicted to be part of nuclear pore outer ring. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NUP37 (nucleoporin 37).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0031080 nuclear pore outer ring cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040718-363 Acts upstream of or within heart development. Predicted to be part of nuclear pore outer ring. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NUP37 (nucleoporin 37).

Ensembl:

ensembl_id ENSDARG00000093287 ENSDARG00000094191

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053682 False 1479 mRNA 0.46 11 17327704 17370410
TCONS_00053683 False 1479 mRNA 0.46 10 17327704 17370417
TCONS_00053685 False 1006 mRNA 0.49 9 17353714 17370108
TCONS_00053686 False 593 processed_transcript 0.48 6 17353740 17363070
TCONS_00053687 False 2802 mRNA 0.42 10 17354670 17377658
TCONS_00053688 False 446 lncRNA 0.44 3 17369801 17370415
TCONS_00053689 True 487 processed_transcript 0.46 2 17370686 17376220

Neighbor

gene id symbol gene type direction distance location
XLOC_027262 igf1 coding upstream 987 17310143 ~ 17326717 (+)
XLOC_027261 bcat1 coding upstream 30284 17279966 ~ 17297420 (+)
XLOC_027260 casc1 coding upstream 75946 17245001 ~ 17251758 (+)
XLOC_027259 NA coding upstream 232584 17090696 ~ 17095120 (+)
XLOC_027258 CR792413.1 coding upstream 265607 17061980 ~ 17062097 (+)
XLOC_027265 ascl1a coding downstream 39453 17417111 ~ 17419193 (+)
XLOC_027266 recql coding downstream 47197 17424855 ~ 17538270 (+)
XLOC_027267 NA coding downstream 81413 17459071 ~ 17459648 (+)
XLOC_027268 itfg2 coding downstream 161476 17539134 ~ 17553996 (+)
XLOC_027269 NA coding downstream 254994 17632652 ~ 17636109 (+)
XLOC_027257 NA non-coding upstream 342421 16981419 ~ 16985283 (+)
XLOC_027256 NA non-coding upstream 360777 16964303 ~ 16966927 (+)
XLOC_027254 NA non-coding upstream 482999 16839553 ~ 16844705 (+)
XLOC_027273 NA non-coding downstream 413959 17791617 ~ 17823782 (+)
XLOC_027275 NA non-coding downstream 944714 18322372 ~ 18348961 (+)
XLOC_027276 NA non-coding downstream 962640 18340298 ~ 18343357 (+)

Expression


Co-expression Network