XLOC_027268 (itfg2)


Basic Information

Item Value
gene id XLOC_027268
gene name itfg2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 17539134 ~ 17553996 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053695
atgtgcatttgtttgtttgcacTGAATGAGAAGTGCAGCTAAAACATGATTTTCTTTAATTGTGGTGTATTCAATTGTTAATTTTAGTCTGCAAAGTTTGATAAGCCATGCGCTCGGTAAGTTATGTTCAGCGTGTGAGTTTAGACTTCACCGGAACACTCTTTCCTCACGCCATCTGTCTTGGAGATGCAGATAACGACTCTTTGAATGAGCTGGTGGTTGGAGACACCAGTGGGAAACTTTACATCTATAAAAATGATGATTGTAAGCCCTGGATCACGAGATCGTGTGTGGGCATGTTAACCTGTGTAGGAGTTGGAGATGTTTGTAACAAAGGAAGGAATGTTGTAGTGGCGGTGGGAGCAGAGGGCTGGTTTCACCTGTTTGACATCAGTTCTGCTGCAGCAAAGTCAGACTCCTCCAGTCAGCAGGACGGCTCAACTGGTGATGAGCAGAAGCCCAGTTACACTCAGCACATCCCCGCCAACACCAAAGTCATGCTCATCAGTGATATTGATGGAGACGGCCGCTGTGAGCTTGTTGTTGGCTACACTGACCGAGTGGTCCGGGCCTTCAGATGGGAGGAACCTTCTGATGCTTCAGATATGAGCTCCGGTCAGCTGGTCCTACTCAAGAAATGGCTCCTGGAGGGTCAGGTGGACAGTCTGTCGGTAAATCCGAGTCCAGAAGGTTTGCCTGAGCTCATGGTGTCTCAGCCCGGCTGTGGTTATGCTATTCTCATGTGCTCGTGGACACAAGAGGGCGCCGCAGGACCTGGGGATGAAAACACAGCAACCCCTAGCAGGGAAGGCTCTTCCAGAGACGTTGTCCTTCATCTTACCACTGGACGCATCCATAACAAGAATGTGTCCACTCACTTGATTGGCAGCATTTCTAGAGGCTCTAAGGATGAATCTTCGAAAGGTGGCCTGTTTGCTCTCTGCACTCTAGACGGAACACTGAAGCTCATGGACAGCTCAGAGAAGCTCTTGTGGTCTGTGCAGGTCGACCACCAGCTTTTTGCCCTCCAGAAGCTGGATGTTACTGGTGATGGGAGAGAGGAAGTGGTGGCCTGTGCTTGGGATGGTCAGACGTACATTATCGATCATACACGGATGGTGGTTCGCTTCCAGTTTGATGAAAATGTGAATGCATTCTGTGCAGGCCAGTATGCATGTAAGGATGGAAGGAACAGCCCCTGTCTGGTCTACGTGAGCTTCAACCATAAGATCTATGTGTACTGGAGGGTGGAGCTGGAGAGGATGGAGCCCACAAACCTGCTGAGTGTGCTGGAGGACAGACCAGAGTATCCACACCTGCTCCACAGACTGGGAGTGGATATGAGTGACACGGTAGCAGTTCGGAAACTCATTGGAGACGTGCTCTACAAGAACATACCGAAAGACGGCGCACAATGAATCATGACTCGCAAACACAGCTCTTCATTTCTGTAAATAGACTTTTATTAAAACCGCTTCACCA

Function

symbol description
itfg2 Predicted to be involved in regulation of TOR signaling. Predicted to be part of KICSTOR complex. Orthologous to human ITFG2 (integrin alpha FG-GAP repeat containing 2).

GO:

id name namespace
GO:0032006 regulation of TOR signaling biological_process
GO:0140007 KICSTOR complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041008-161 Predicted to be involved in regulation of TOR signaling. Predicted to be part of KICSTOR complex. Orthologous to human ITFG2 (integrin alpha FG-GAP repeat containing 2).

Ensembl:

ensembl_id ENSDARG00000002174

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053695 True 1482 mRNA 0.49 12 17539134 17553996

Neighbor

gene id symbol gene type direction distance location
XLOC_027266 recql coding upstream 864 17424855 ~ 17538270 (+)
XLOC_027267 NA coding upstream 79486 17459071 ~ 17459648 (+)
XLOC_027265 ascl1a coding upstream 119941 17417111 ~ 17419193 (+)
XLOC_027263 nup37 coding upstream 161476 17327704 ~ 17377658 (+)
XLOC_027264 pmch coding upstream 200381 17336557 ~ 17338753 (+)
XLOC_027269 NA coding downstream 78656 17632652 ~ 17636109 (+)
XLOC_027270 cwf19l1 coding downstream 88735 17642731 ~ 17653566 (+)
XLOC_027271 washc3 coding downstream 101876 17655872 ~ 17662078 (+)
XLOC_027272 gnptab coding downstream 117168 17671164 ~ 17705108 (+)
XLOC_027273 NA coding downstream 237621 17791617 ~ 17823782 (+)
XLOC_027259 NA non-coding upstream 444014 17090696 ~ 17095120 (+)
XLOC_027258 CR792413.1 non-coding upstream 477037 17061980 ~ 17062097 (+)
XLOC_027257 NA non-coding upstream 553851 16981419 ~ 16985283 (+)
XLOC_027256 NA non-coding upstream 572207 16964303 ~ 16966927 (+)
XLOC_027275 NA non-coding downstream 768376 18322372 ~ 18348961 (+)
XLOC_027276 NA non-coding downstream 786302 18340298 ~ 18343357 (+)
XLOC_027277 BX649398.2 non-coding downstream 865546 18419542 ~ 18434077 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_01548935_01559598 ITFG2 coding CI01000020 null 1548883 ~ 1559598 (-)