G831393


Basic Information

Item Value
gene id G831393
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 64865944 ~ 64869519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU945358
CCACACGCTTAATGACCCTATATATAAATACCAAagaatatacattttttaaataggtAAGATGACCTCCACAAACAAAACATCATACACACCAGCAAACCACTGGAGCCGTATAGCAATGAGAGTAGGTAGGTATCCTGGAAGGAAGTTACAGCATACACTCATGTAGCTCACAGTAGACAAAGAATAGAACTCCCACAGAAATCTAAAATGACGTCAACAAAAAGGATAGATCTCAGTGCTACACAACTTTGGGTGCACATACCAGGATGTCAAATTCACCCACCCACAGTAGCAAATAGAGATGTAGTACTAGATTACACTAGAGGTAGAGCTGAAAGGGTGTAGAGACGAAGAGGGGTACTCCAAAACCCTCTAAAGCACAGCCTTCAATTATCAATGATGTCCATCACAGTTGAATTACAgtgcatttctgtattttatttttaataaatgtgcaaagaaAAGCATGTGAATGGCATATTATGgcatattgtgtgtaaatggttgagagaaaacatatatttaatccattttgaattcagactgtaacacaacaaaatgtggaataagtcaaggggtatgaatactttctgaaggctctgtatatgTGACAGATGTCACACTTTCACTACAGCTACACCTCTGTGTGAAGGAACACAGTGATGTCCTATACAGTAGAATCAATATCTCAACCCTTTGGACTAACAATTCAAACCTTATCAGATAGTTGTGAGAGGTTACATTTACTTTTAGAAAGAAAATcagagaaataaaaataaaagagtaAACAAAACACTATGGTAATGATTATGATAATAACAGACTGGATTAATAAGGAGTATCCAAGTGTAAAAATAAAATAGCCCCCAAAACATCTCTTACTGCGAAAAAACAGGTGCAAATAGAGCAAATTACAAATATACCAAGAAAAAAGTGTCCCTAGCACCTTATTCTTTCTTAAagggggcaatctgcagttcaaacaacaacaatggcagattgcccctttaaattaCCTAGCTTTAGTATTCTCTTCTTATCAAATGTCATTAGCTTAAACTAAACCAGAACATAACTTCATTACGATATAACTAAAGTTGAGTATTGGTTGAAAATCATGAAAAATATAGTGTTATTAAACCAGTACTAATAATATTTTCCCGGGAAACCTTCCATAAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTCGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTCGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTGCAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTCGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTCGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTATAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTTTGCCAGACTGATGATGCTTGGCTGAAGAAGAGACTATTCATTTCCCAATGTGTTATTTAGGCACAAATGTAGAACTGCATCACTCTAAAGCAGAGCTTTGAGCATACCATGTACAGTACGTCTAGTCTAATAAAACTGATCATCTAGAAATACTTCTTCTATAACAAATACATTGATTTAGCTTTAAAACCAAACACTGACTTAAGGTTAAAATGTGGTATGATGTATGCTCTTATTGCAGGGACTCTACAGCTACCAGCCTGCAGGAGCAATAGCTTTATGTAGATGAGGATAGAATATATTATGAGATTAATAAAAACATGAGAGAACATTAAAATGTCACTCCGACCACTCTAACTACCATTCTGCTCTACCATTCATCTTGATTAATCTCTCTATAACCAAACTTCCCCCAACCGTTTTTCCCATTTCAGATGCTTCTCTGTCTGTAATTATCCTCTCAACTAGCACTAGGACAGCATTAATAAAGCAAGAATCAAATAATGATGAAGAACAGAAAGTGCTTATAATATAAAGTCTTAGGTTTGAATATGAGGAAAATCATGTTATGTGTCAGTACTTTACAATGATTCTTCTAATATAGTTGTAGTGTGTTTCAATAACTATAATTACAGTATTCTGAAGAGGTACACGTTTGCTGCGCAGACAGAAAAGTTAAAAGCAACTTTTAGATTTAAAAATGGAGAGAACTGTGAATATAGCCTAATCAACCAGACTGACTCAACCAGGctactatgaatatactgtaaCAAATAAATGCAATGTTTTTCATCGTTCTTTTCTAGGAGACGAAACGTTGAAACAATTATACAGTATTTCTTTCTGGCTCGACTGAAATCAGAGAGGGAGCCTTTAATAACTGACTTATGTTAATTAGTGACCTGTCATGATGTCTCATAAAGTGACATAACACAATCCATAAAGCTCACGACATCAACTCCTCCTGCAACTGAAATAACCCTGTTATAAAACATTACTATTTGAAATCGAATTAACCctttaaaatgtcaaatgttttacgCTTTATAACAGTGCTATGTCAGGTCGTAACTACGATTTCAGCTATTACGACAGGTATTATGTCATTCTTAAGACCATGTTAAGTATAATGGGGGCAACACAACAGCCTTAAAGTCATTCGTCAAAGAAAGAGTTCATATAAAATGTAAAAGCAAATTGCATATTAACATAGTTTGTCAAGAGTAGAGGTGAGTTgtagtgtgtgtgcttgtgtgctgaATGGCAAGTTAAAGTAATGGCCAAACAGCCAGTGCTGGTGTAGATCTGATCCTGCATCGCCATTCTACCACTGAGCGGTATCAGCCAGG
>TU945359
CCACACGCTTAATGACCCTATATATAAATACCAAagaatatacattttttaaataggtAAGATGACCTCCACAAACAAAACATCATACACACCAGCAAACCACTGGAGCCGTATAGCAATGAGAGTAGGTAGGTATCCTGGAAGGAAGTTACAGCATACACTCATGTAGCTCACAGTAGACAAAGAATAGAACTCCCACAGAAATCTAAAATGACGTCAACAAAAAGGATAGATCTCAGTGCTACACAACTTTGGGTGCACATACCAGGATGTCAAATTCACCCACCCACAGTAGCAAATAGAGATGTAGTACTAGATTACACTAGAGGTAGAGCTGAAAGGGTGTAGAGACGAAGAGGGGTACTCCAAAACCCTCTAAAGCACAGCCTTCAATTATCAATGATGTCCATCACAGTTGAATTACAgtgcatttctgtattttatttttaataaatgtgcaaagaaAAGCATGTGAATGGCATATTATGgcatattgtgtgtaaatggttgagagaaaacatatatttaatccattttgaattcagactgtaacacaacaaaatgtggaataagtcaaggggtatgaatactttctgaaggctctgtatatgTGACAGATGTCACACTTTCACTACAGCTACACCTCTGTGTGAAGGAACACAGTGATGTCCTATACAGTAGAATCAATATCTCAACCCTTTGGACTAACAATTCAAACCTTATCAGATAGTTGTGAGAGGTTACATTTACTTTTAGAAAGAAAATcagagaaataaaaataaaagagtaAACAAAACACTATGGTAATGATTATGATAATAACAGACTGGATTAATAAGGAGTATCCAAGTGTAAAAATAAAATAGCCCCCAAAACATCTCTTACTGCGAAAAAACAGGTGCAAATAGAGCAAATTACAAATATACCAAGAAAAAAGTGTCCCTAGCACCTTATTCTTTCTTAAagggggcaatctgcagttcaaacaacaacaatggcagattgcccctttaaattaCCTAGCTTTAGTATTCTCTTCTTATCAAATGTCATTAGCTTAAACTAAACCAGAACATAACTTCATTACGATATAACTAAAGTTGAGTATTGGTTGAAAATCATGAAAAATATAGTGTTATTAAACCAGTACTAATAATATTTTCCCGGGAAACCTTCCATAAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTCGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTCGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTCGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTCGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTATAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTCGTTTACAAGTCTTGTAACATCTGTATCTATAAATTACATTATGTTATCATGAGATTCCTTAGTTTACAAGTCTTGTTTGCCAGACTGATGATGCTTGGCTGAAGAAGAGACTATTCATTTCCCAATGTGTTATTTAGGCACAAATGTAGAACTGCATCACTCTAAAGCAGAGCTTTGAGCATACCATGTACAGTACGTCTAGTCTAATAAAACTGATCATCTAGAAATACTTCTTCTATAACAAATACATTGATTTAGCTTTAAAACCAAACACTGACTTAAGGTTAAAATGTGGTATGATGTATGCTCTTATTGCAGGGACTCTACAGCTACCAGCCTGCAGGAGCAATAGCTTTATGTAGATGAGGATAGAATATATTATGAGATTAATAAAAACATGAGAGAACATTAAAATGTCACTCCGACCACTCTAACTACCATTCTGCTCTACCATTCATCTTGATTAATCTCTCTATAACCAAACTTCCCCCAACCGTTTTTCCCATTTCAGATGCTTCTCTGTCTGTAATTATCCTCTCAACTAGCACTAGGACAGCATTAATAAAGCAAGAATCAAATAATGATGAAGAACAGAAAGTGCTTATAATATAAAGTCTTAGGTTTGAATATGAGGAAAATCATGTTATGTGTCAGTACTTTACAATGATTCTTCTAATATAGTTGTAGTGTGTTTCAATAACTATAATTACAGTATTCTGAAGAGGTACACGTTTGCTGCGCAGACAGAAAAGTTAAAAGCAACTTTTAGATTTAAAAATGGAGAGAACTGTGAATATAGCCTAATCAACCAGACTGACTCAACCAGGctactatgaatatactgtaaCAAATAAATGCAATGTTTTTCATCGTTCTTTTCTAGGAGACGAAACGTTGAAACAATTATACAGTATTTCTTTCTGGCTCGACTGAAATCAGAGAGGGAGCCTTTAATAACTGACTTATGTTAATTAGTGACCTGTCATGATGTCTCATAAAGTGACATAACACAATCCATAAAGCTCACGACATCAACTCCTCCTGCAACTGAAATAACCCTGTTATAAAACATTACTATTTGAAATCGAATTAACCctttaaaatgtcaaatgttttacgCTTTATAACAGTGCTATGTCAGGTCGTAACTACGATTTCAGCTATTACGACAGGTATTATGTCATTCTTAAGACCATGTTAAGTATAATGGGGGCAACACAACAGCCTTAAAGTCATTCGTCAAAGAAAGAGTTCATATAAAATGTAAAAGCAAATTGCATATTAACATAGTTTGTCAAGAGTAGAGGTGAGTTgtagtgtgtgtgcttgtgtgctgaATGGCAAGTTAAAGTAATGGCCAAACAGCCAGTGCTGGTGTAGATCTGATCCTGCATCGCCATTCTACCACTGAGCGGTATCAGCCAGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU945358 False 3515 lncRNA 0.33 2 64865944 64869519
TU945359 True 3515 lncRNA 0.33 2 64865944 64869519

Neighbor

gene id symbol gene type direction distance location
LOC110533032 hoxc13ab coding downstream 93039 64768591 ~ 64772905 (-)
LOC110532675 hoxc12ab coding downstream 105283 64756584 ~ 64760661 (-)
LOC110532674 hoxc11ab coding downstream 120967 64741165 ~ 64744977 (-)
LOC110532669 hoxc9ab coding downstream 145549 64716626 ~ 64720395 (-)
LOC110532670 hoxc8ab coding downstream 152200 64710256 ~ 64713744 (-)
LOC110532677 LOC106567065 coding upstream 10180 64879699 ~ 64985955 (-)
LOC110532684 LOC106567062 coding upstream 227102 65096621 ~ 65131339 (-)
LOC110532685 NA coding upstream 537394 65406913 ~ 65498864 (-)
LOC110531238 LOC106572666 coding upstream 629961 65499480 ~ 65538745 (-)
LOC118966093 NA coding upstream 677225 65546704 ~ 65548816 (-)
G831385 LOC106572538 non-coding downstream 7362 64856223 ~ 64858582 (-)
G831364 NA non-coding downstream 54761 64810973 ~ 64811183 (-)
G831258 NA non-coding downstream 85874 64779837 ~ 64780070 (-)
G831239 NA non-coding downstream 115263 64750408 ~ 64750681 (-)
G831238 NA non-coding downstream 115622 64750105 ~ 64750322 (-)
G831424 NA non-coding upstream 84689 64954208 ~ 64954495 (-)
G831541 NA non-coding upstream 139270 65008789 ~ 65009002 (-)
G831543 NA non-coding upstream 140747 65010266 ~ 65010489 (-)
G831544 NA non-coding upstream 141183 65010702 ~ 65010934 (-)
G831545 NA non-coding upstream 142582 65012101 ~ 65036670 (-)
G830543 LOC108255233 other downstream 824733 64027907 ~ 64041211 (-)
LOC110532632 LOC106572615 other downstream 966640 63862848 ~ 63899379 (-)
G829644 NA other downstream 2073448 62790588 ~ 62792496 (-)
tmem269 pss other downstream 3147979 61683104 ~ 61717981 (-)
G831986 NA other upstream 501334 65370853 ~ 65413071 (-)
G832008 NA other upstream 544976 65414495 ~ 65418096 (-)
G832392 LOC106572669 other upstream 907064 65776583 ~ 65781798 (-)
G832401 kmt2d other upstream 924338 65793857 ~ 65795190 (-)
G832461 NA other upstream 1076663 65946182 ~ 65946593 (-)

Expression


Co-expression Network