XLOC_027276


Basic Information

Item Value
gene id XLOC_027276
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18340298 ~ 18343357 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057145
agagtgtatgggtgtttccctgtactgggttgcggcaggaaggccATCTGCttcctaaaacatatgctgaaatagttggtgattcattccactgtgaagaCCTTTAATAAATAAGAGACGAagtagaaggaaaatgaatgaatgaatcaatcaatcaatgaacttCTATATCTGTCTATCAGTGGTGGAAGGAAGATTCATGTTCAGGGGACCAATATGGAATATGTGGAGTCAGTTAACGTTTGCCATTCTAATAAAGTGGTGGAAACCAAATACAACACAAACGCAGAGGAAATGTGGATTCATTCCCCCCGTTATGATGGCAGTGGACAATTAAGCTTATCGCTAAATGTTGGAAACTCCACAGTGGACTGTGTGCATTATATCTCATACCATCCTGATCCAAAGTTCACTCAATTTTCCACATTTCAGGTGGCTGACGACCTGCTAGTGTACATTCAGAAAAAGACAGATGAGTTGAATTTGAGTATGAGTGAGGTGAACGTGACGGGTCAACAGGGAGATCGGGAGTATGAGTGTGTTTTGGAGAGGATTAAATCCAATGctattatttgctaaattaaaGGAGAAAGAGGAGCCGCCCCAGCAGTGGATTCACTCCATatcagtGTTGGAAATTCTTTTGTTCTCAGGATGGGAGAAGGTACAAAACATTTCTGCCTCAGACATCAAAACCCATCTGATCAAGTTTAAAGAAGCAAAAGAAAACACTCTGACGAAACTCCCACAgcagaaattaaaagaaaaaaggcTTGAAAATCATGCTTGGCGTATATAATACAGTAGGCTTTTATATGTAGATGTATTGTCATACCACTGTGCAAGTGTTATTCTAAGATGTTGAATTTGTTAttaactgtataaataatttgtcatatataatgtttttatattactaaTGTTCAGCTTTAACAAAATTAAGACAATTTTATGCACTCTGTTTTTCCTTACTTATAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057145 True 980 lncRNA 0.37 4 18340298 18343357

Neighbor

gene id symbol gene type direction distance location
XLOC_027274 apaf1 coding upstream 466250 17843717 ~ 17874048 (+)
XLOC_027273 NA coding upstream 516516 17791617 ~ 17823782 (+)
XLOC_027272 gnptab coding upstream 635190 17671164 ~ 17705108 (+)
XLOC_027271 washc3 coding upstream 678220 17655872 ~ 17662078 (+)
XLOC_027270 cwf19l1 coding upstream 686732 17642731 ~ 17653566 (+)
XLOC_027277 BX649398.2 coding downstream 76185 18419542 ~ 18434077 (+)
XLOC_027278 ncaph2 coding downstream 98631 18441988 ~ 18455497 (+)
XLOC_027279 BX649398.3 coding downstream 126294 18469651 ~ 18473591 (+)
XLOC_027280 si:dkey-202b22.5 coding downstream 145850 18489207 ~ 18491333 (+)
XLOC_027281 si:dkey-202b22.6 coding downstream 151500 18494857 ~ 18499761 (+)
XLOC_027269 NA non-coding upstream 704189 17632652 ~ 17636109 (+)
XLOC_027267 NA non-coding upstream 880650 17459071 ~ 17459648 (+)
XLOC_027259 NA non-coding upstream 1245178 17090696 ~ 17095120 (+)
XLOC_027258 CR792413.1 non-coding upstream 1278201 17061980 ~ 17062097 (+)
XLOC_027282 NA non-coding downstream 171058 18514415 ~ 18518959 (+)
XLOC_027283 NA non-coding downstream 248525 18591882 ~ 18597645 (+)
XLOC_027289 BX649534.1 non-coding downstream 573611 18916968 ~ 18917082 (+)

Expression


Co-expression Network