G832902 (LOC106572714)


Basic Information

Item Value
gene id G832902
gene name LOC106572714
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66605776 ~ 66616927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU947133
CTTTGCGATCTCGTTCTGCCTCTTGACCTTCTCCTCCTCGAACTCTCTGATGTTCCTGACTCCAATCTCCTTACAGAACTCGATGAACACCTCGTCTTCCACAACGTTCATACGGTCTCTCAGATCATTGACCTCCTTCTCACGGGATTGGATGATCCTCTTGATGTCGTTAATGCGAGGGCAGAAGTTagccagctcactctccagcttAGACTTCTCCtgcatgttgagggagaggtgtcGGGTCTTGGTCTGTTCCAGGTCACTCTGGGagtatttcagtctcatctggaGGCCGTGGGCCTGAGACTGGACCTGACGCAGCTCTGCCTCCTTCCTCTTAGCCTTCATTTGCTCCTTGAGTTCCTCAGTGAGTTTCTCCTTCTTGTCCTTGAGTTTGTCCACAGCCTTCTCATCCCAGCGCCTGGCCTTAGCCTTTAGATCACTGGCTCCACCCGAGATCACACCAGACTTCTGGAAAAGTGTACCGTCCAGGGCCAccgtCTTGTGTCTGTAGGGCCCTCCGAAGGCGATGCGTCGAGCGTCCTCTACGTTCTCACAGACCAGTGCGTTACCACAGGCGTACTGCAGGGCCTTCTTAATGTGAGGCGGCTCGTAGCGGATCACATCGATCACCAGCTTGGCTCCACGCAGCTCACGCAGCTTCTCATCTGTAGGCTTCAcCTCCAGATAGTCGAGTGGCAGGAAGGTCTctggctctcctctctgctctttgaTGTACTGGATACAGTCTCTACCGGTCTTCTCTGAGTCCACGATAATGGCGTCCATATTCTTGCCCAGCACCTTGGTCACAGCGATCTGAAACTTCTTCTGAGTGGGCTGACACAGGTCGATCAGACGGCCGTACACAGATCCGGGGTACAGTCTCTTGATGCTGTCCATGATCTCTGCTTTGCgtgcctgcctgctgttctccTGTCTGTCGATCCTGGCGTCACCTAGCTGCTCCATCACCTGATTGAGTTCCAGGTTGATCTCGTCGATCCTGTTCTTTGCCCCCTCCACCTGCTCAGTCAGCTCCTCCtccattctgttctgttcatccAGAGACTGCTTGCTGGTGGTAATGTAGTCCTCCAGCTTCTCAATACGCTTCTGGTTCTCCTCTATCTCACGGATCTTCTGCTTGATCTTTGCCTCAGTCTCcactttcttcctctcttccagGTCGAGGCGGTCCTGGTCTGCCTTCTGGTCTCTGTTGAACTTCTCCAGCTCCTGGGCAAGAGTGGCCGCCCGCTTACTGGCCTCCTCCTTCAGACGGTGGTACACCTTCacCTGATTTTCCTCCAGTGTGAGGTCCTGTCCCTGGCTCTGGGCCTCCTCCTCCATTCGGTCGTCAAACTCCTGCCGGGCCATCTCCACAGCGCCCTGTTCTTTCTCCAACTCATCCATGTCCCCCTTCCTCTTCTTGTACAGCTTCTGGGCGTTCTGGAGGGACTTCTTGGCTGCTTCTAGTTTTTTGATCTTGTGGGAGGTGTTTTCTTTGGCCTTGATGTACTGGGGTCGCTTCTGGTTCAGCTCAGCGTCCTTCTCCTTGATCTCTTTCTCCACAGTCTGTTGGTCTCTCATCATCCTTCCCagctctttcttcttctccttcagttCCTCCTCCACGTGGTCCATCTTCTTGCGGTCCTTGTCAATCCCCTTGTTGTGTTGCGACAGCTCGCGGTTCAGCTTCTCGATCTCAGCATCATTGTGATACAGTTTGAACAGCTGCATCTGGACATGGGCTTTCACCACCTCGTCCTTCAGACGCTGGTAACGC

Function

NR:

description
structural maintenance of chromosomes protein 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU947133 True 1795 lncRNA 0.54 10 66605776 66616927

Neighbor

gene id symbol gene type direction distance location
LOC110532711 LOC106572715 coding upstream 12191 66582815 ~ 66593585 (+)
LOC110532709 myl6b coding upstream 89774 66506476 ~ 66516002 (+)
LOC118965939 NA coding upstream 123397 66481679 ~ 66482379 (+)
LOC110532708 LOC106572691 coding upstream 124232 66478086 ~ 66481544 (+)
birc5b LOC106572692 coding upstream 148872 66451326 ~ 66456904 (+)
LOC118966099 NA coding downstream 2638 66615300 ~ 66628653 (+)
LOC110532716 LOC106572708 coding downstream 411102 67028029 ~ 67042094 (+)
LOC110532719 ssrd coding downstream 428270 67045197 ~ 67049885 (+)
LOC110532722 LOC106572704 coding downstream 646637 67263564 ~ 67278303 (+)
LOC110532726 LOC106572718 coding downstream 863425 67480352 ~ 67580588 (+)
G832905 NA non-coding upstream 5662 66597218 ~ 66600114 (+)
G832852 NA non-coding upstream 114887 66490293 ~ 66490889 (+)
G832851 NA non-coding upstream 118320 66486986 ~ 66487456 (+)
G832850 NA non-coding upstream 119524 66486018 ~ 66486252 (+)
G832844 NA non-coding upstream 131186 66474365 ~ 66474590 (+)
G832921 LOC106572714 non-coding downstream 1024 66617951 ~ 66618558 (+)
G832930 NA non-coding downstream 23367 66640294 ~ 66640848 (+)
G832938 LOC106572712 non-coding downstream 41597 66658524 ~ 66660256 (+)
G832939 LOC106572712 non-coding downstream 43669 66660596 ~ 66665807 (+)
G832907 LOC106572712 non-coding downstream 58673 66675600 ~ 66751166 (+)
LOC110532701 LOC106572669 other upstream 804945 65754497 ~ 65801814 (+)
LOC110532705 LOC106567051 other upstream 934293 65669353 ~ 65671483 (+)
G831865 NA other upstream 982460 65622938 ~ 65623316 (+)
G831810 NA other upstream 1090791 65514393 ~ 65514985 (+)
LOC110531237 LOC106567057 other upstream 1237644 65186569 ~ 65405501 (+)
G833100 LOC106613929 other downstream 142351 66759278 ~ 66759673 (+)
G833139 LOC100380641 other downstream 197537 66814464 ~ 66821639 (+)
G833241 LOC106572720 other downstream 314761 66931688 ~ 66934487 (+)
G833541 NA other downstream 596493 67213420 ~ 67213884 (+)
G833906 LOC100194703 other downstream 1003951 67620878 ~ 67621366 (+)

Expression


Co-expression Network