G833350


Basic Information

Item Value
gene id G833350
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66793265 ~ 66795448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU947716
CCCTCGCCAACTGCCAATGacattgcagggcgccaaatacaaatcaaacacaaatcaaatttctcaaacatacaagtattaggcaccattttaaagataaaattctcattaatccagccacagtgatttcaaaaatgctttacagcgaaagcccCACAAACGATTaagttaggtcaccaccaactcacagaaaaacccagtcatttttccagccaacGAGAGGAGTCACataaagcacaaatagagagaaaatgcatcactaacctttgatgatcttcatcagatgacactcgtaggacttcatgttacacaatacatgtatgttttgttctgtaaaattcatatttatatccaaaaatcttattttacattggcgtgttatgttcagtagttccaaaacatgcagtgatattgcagagagccacatgaattcacagaaatacataataaatgttgatgaaaatacaactattatacatggaactttagatacacttttccttaatgcaaccgctttgtcagatttcccCAAAaaattacggaaaaagcataatttgataacggcgctcagagcccaaaccagccagagaaatatccgccatgttgcgtagtcaacattattcataaatagcattataaatattcacttacctttgatgatcttcatcagaatgcactcccaggaatcgcagttccacaataaatgcttgttttgttcgataatgtccatttatgtccaatagcttattttgttagggcgtttggtaaacaaatccaaaagcgcgatcTGGTCCATTCGGATGAaatgttcaaaaagttatattacaggtcgaagaaacttgtcaaactaagtatagaatcaatctttaggatgttgttatcataaaagttaaataatgttccaaccggagaattccattgtctgtagaaaagcaatggaacacaGGTTGCTCTTATGTGAAAGCgtgtgactgagaacgaggctgcaGGCCAACCCCTTAGTAAAACAGCTCCcatccggccccccttcacatgagaagcctgaaacaacgttctaacaCTTGACActtgtaccagagaggttaagacaattgatgtatggaggATTCATAGTGAaggctgggtttgtgcagataaccaacttacgatgtttggaatgagactaacaagaggtaaagaataattcattaattagaagactgaTTGATCAGATATttaaatatctgaaaagttatattaggaaaattataactttgtaatctgaagattttccttggtgccccgacttcctagttaattacatttacatgattagttaatcacgtaataataattacagagaattgatttgataaaataagtcttcactttaatgatgccaaagacatgaCTATTCTAATGCAGTCATCTCGGTTTTCAGTTTTTAAAtgtttgtatcaattgcaaagaTATTGGCAACTTTATTTGTcgtcaactttgttctgaagttatcggcggtcacagagagacagataaaagGTGTGATAATGTTCAGTggctatcttctgtgtataaAAAGATGCAGGAGGACAAAAATGCCCACTTTCCCTCTTACCTCCACAGCCCTCTCCCCCCATCCTCCATCCCCCGTCTTCCGTCTCCTCCATATCTAGCCTTGTCTCATAGCAATCTCCCGTTACCGGCTTTAGTGTGGAACTTTTGTCCCACTTGAGAACTTGCTGCTACAACAGAGGGAACTCTTCCACTATGATAAGGGAATTTATATGTTTAAGGTAATGACTAAAGAATTCCACCCTGAAATGTAATTATTAGATCATGTAACATGTATAATGAATTAGAATGATAAATTTCAGTCTAATAAGGTTTGGTCGAGACAAgtagaaatgtgtgtgtgactAAGAAATTACAGAGAACAATTAAACTATGTATGACCTGACCTGGCTAGAACTCTGAGAAACTTACGGTAGGAAAGGGAGTCCCGTCAAGGTCTCTCTAATCTCGGGAGGATGGAACTGCCATCTTGGTAGTGATAAACGAGTGGTGAGAACTGTGGGGAAAGATACATcccacctactgtttgtgtgtctgtatgtgcgtGTAGTAGGTAGGTAGGGGTGAGTTATAAAATGGCATGTCTTTGTATTATGGACTTTAGAACAttctctgaataaactgtacaggcct
>TU947717
ttccattgtctgtagaaaagcaatggaacacaGGTTGCTCTTATGTGAAAGCgtgtgactgagaacgaggctgcaGGCCAACCCCTTAGTAAAACAGCTCCcatccggccccccttcacatgagaagcctgaaacaacgttctaacaCTTGACActtgtaccagagaggttaagacaattgatgtatggaggATTCATAGTGAaggctgggtttgtgcagataaccaacttacgatgtttggaatgagactaacaagaggtaaagaataattcattaattagaagactgaTTGATCAGATATttaaatatctgaaaagttatattaggaaaattataactttgtaatctgaagattttccttggtgccccgacttcctagttaattacatttacatgattagttaatcacgtaataataattacagagaattgatttgataaaataagtcttcactttaatgatgccaaagacatgaCTATTCTAATGCAGTCATCTCGGTTTTCAGTTTTTAAAtgtttgtatcaattgcaaagaTATTGGCAACTTTATTTGTcgtcaactttgttctgaagttatcggcggtcacagagagacagataaaagGTGTGATAATGTTCAGTggctatcttctgtgtataaAAAGATGCAGGAGGACAAAAATGCCCACTTTCCCTCTTACCTCCACAGCCCTCTCCCCCCATCCTCCATCCCCCGTCTTCCGTCTCCTCCATATCTAGCCTTGTCTCATAGCAATCTCCCGTTACCGGCTTTAGTGTGGAACTTTTGTCCCACTTGAGAACTTGCTGCTACAACAGAGGGAACTCTTCCACTATGATAAGGGAATTTATATGTTTAAGGTAATGACTAAAGAATTCCACCCTGAAATGTAATTATTAGATCATGTAACATGTATAATGAATTAGAATGATAAATTTCAGTCTAATAAGGTTTGGTCGAGACAAgtagaaatgtgtgtgtgactAAGAAATTACAGAGAACAATTAAACTATGTATGACCTGACCTGGCTAGAACTCTGAGAAACTTACGGTAGGAAAGGGAGTCCCGTCAAGGTCTCTCTAATCTCGGGAGGATGGAACTGCCATCTTGGTAGTGATAAACGAGTGGTGAGAACTGTGGGGAAAGATACATcccacctactgtttgtgtgtctgtatgtgcgtGTAGTAGGTAGGTAGGGGTGAGTTATAAAATGGCATGTCTTTGTATTATGGACTTTAGAACAttctctgaataaactgtacaggcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU947716 False 2184 lncRNA 0.38 1 66793265 66795448
TU947717 True 1271 lncRNA 0.39 1 66793265 66794535

Neighbor

gene id symbol gene type direction distance location
l1cama LOC106572712 coding downstream 42140 66627920 ~ 66751125 (-)
LOC110531241 LOC106572714 coding downstream 173729 66597200 ~ 66619536 (-)
LOC110532712 NA coding downstream 203900 66586609 ~ 66589365 (-)
LOC118966098 LOC106567034 coding downstream 249988 66522662 ~ 66543277 (-)
LOC110531240 LOC106567037 coding downstream 362348 66228457 ~ 66430917 (-)
LOC110531242 LOC100380641 coding upstream 4593 66800041 ~ 66888485 (-)
LOC110532714 LOC106572710 coding upstream 99232 66889894 ~ 66928852 (-)
LOC110532715 LOC106572720 coding upstream 137477 66932925 ~ 67018969 (-)
LOC110532718 fam3a coding upstream 224867 67020315 ~ 67029099 (-)
LOC110531244 LOC106572707 coding upstream 273868 67069316 ~ 67133237 (-)
G833118 NA non-coding downstream 23739 66769277 ~ 66769526 (-)
G833091 NA non-coding downstream 43417 66749561 ~ 66749848 (-)
G833073 NA non-coding downstream 55516 66720785 ~ 66737749 (-)
G833076 NA non-coding downstream 68358 66724543 ~ 66724907 (-)
G833074 NA non-coding downstream 70067 66721961 ~ 66723198 (-)
G833355 NA non-coding upstream 6019 66801467 ~ 66801991 (-)
G833358 NA non-coding upstream 36607 66832055 ~ 66832539 (-)
G833380 NA non-coding upstream 125569 66921017 ~ 66921810 (-)
G833396 NA non-coding upstream 178278 66973726 ~ 66974564 (-)
G833029 NA other downstream 204585 66587412 ~ 66588680 (-)
G832991 myl6b other downstream 281699 66506278 ~ 66515999 (-)
LOC110532692 LOC106572690 other downstream 645580 66127916 ~ 66147685 (-)
G832503 NA other downstream 757085 66035872 ~ 66036180 (-)
G833521 NA other upstream 383801 67179249 ~ 67185243 (-)
LOC110531246 LOC106572701 other upstream 653003 67327762 ~ 67455661 (-)
LOC110532727 LOC106572699 other upstream 747702 67543067 ~ 67560577 (-)
LOC110531249 LOC106572727 other upstream 1232960 68028408 ~ 68079899 (-)
G834676 NA other upstream 1580210 68375658 ~ 68376157 (-)

Expression


Co-expression Network