Gene
RNA
| Item | Value |
|---|---|
| gene id | G833139 |
| gene name | LOC100380641 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 66814464 ~ 66821639 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| E3 ubiquitin-protein ligase HUWE1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU947422 | True | 334 | TUCP | 0.65 | 2 | 66814464 | 66821639 |
66,807,000
66,808,000
66,809,000
66,810,000
66,811,000
66,812,000
66,813,000
66,814,000
66,815,000
66,816,000
66,817,000
66,818,000
66,819,000
66,820,000
66,821,000
66,822,000
66,823,000
66,824,000
66,825,000
NC_048573.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118966099 | NA | coding | upstream | 188639 | 66615300 ~ 66628653 (+) |
| LOC110532711 | LOC106572715 | coding | upstream | 220879 | 66582815 ~ 66593585 (+) |
| LOC110532709 | myl6b | coding | upstream | 298462 | 66506476 ~ 66516002 (+) |
| LOC118965939 | NA | coding | upstream | 332085 | 66481679 ~ 66482379 (+) |
| LOC110532708 | LOC106572691 | coding | upstream | 332920 | 66478086 ~ 66481544 (+) |
| LOC110532716 | LOC106572708 | coding | downstream | 206390 | 67028029 ~ 67042094 (+) |
| LOC110532719 | ssrd | coding | downstream | 223558 | 67045197 ~ 67049885 (+) |
| LOC110532722 | LOC106572704 | coding | downstream | 441925 | 67263564 ~ 67278303 (+) |
| LOC110532726 | LOC106572718 | coding | downstream | 658713 | 67480352 ~ 67580588 (+) |
| LOC110532729 | LOC106572697 | coding | downstream | 786034 | 67607673 ~ 67618114 (+) |
| G833142 | NA | non-coding | upstream | 20879 | 66793266 ~ 66793585 (+) |
| G833099 | NA | non-coding | upstream | 55556 | 66758653 ~ 66758908 (+) |
| G833097 | NA | non-coding | upstream | 56002 | 66757948 ~ 66758462 (+) |
| G832907 | LOC106572712 | non-coding | upstream | 63298 | 66675600 ~ 66751166 (+) |
| G832939 | LOC106572712 | non-coding | upstream | 148657 | 66660596 ~ 66665807 (+) |
| G833230 | NA | non-coding | downstream | 99363 | 66921002 ~ 66921794 (+) |
| G833239 | LOC106572710 | non-coding | downstream | 104939 | 66926578 ~ 66927097 (+) |
| G833240 | LOC100846954 | non-coding | downstream | 108052 | 66929691 ~ 66931359 (+) |
| G833271 | NA | non-coding | downstream | 198718 | 67020357 ~ 67021927 (+) |
| G833307 | NA | non-coding | downstream | 245104 | 67066743 ~ 67067594 (+) |
| G833100 | LOC106613929 | other | upstream | 54791 | 66759278 ~ 66759673 (+) |
| LOC110532701 | LOC106572669 | other | upstream | 1013633 | 65754497 ~ 65801814 (+) |
| LOC110532705 | LOC106567051 | other | upstream | 1142981 | 65669353 ~ 65671483 (+) |
| G831865 | NA | other | upstream | 1191148 | 65622938 ~ 65623316 (+) |
| G831810 | NA | other | upstream | 1299479 | 65514393 ~ 65514985 (+) |
| G833241 | LOC106572720 | other | downstream | 110049 | 66931688 ~ 66934487 (+) |
| G833541 | NA | other | downstream | 391781 | 67213420 ~ 67213884 (+) |
| G833906 | LOC100194703 | other | downstream | 799239 | 67620878 ~ 67621366 (+) |
| G834099 | NA | other | downstream | 1227274 | 68048913 ~ 68049222 (+) |
| fance | fance | other | downstream | 1395439 | 68213202 ~ 68218960 (+) |
