G833346 (ssrd)


Basic Information

Item Value
gene id G833346
gene name ssrd
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67045237 ~ 67050383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU947689
cggctttattaactcaatgataaataaatattgtttgcaaactgacatGTGACACGTATTAAATCCAAAATAACAGGCAAGCCCCTAAATATTTTgttgctaaaaatgtggggctcaaaacaggtggctCGGCCCCACTTACACTAAATGACAGGTCTCAACTGAAAACCTATACAGTATAACAGGCATCCAATTTCACAAATAAACCCCCCTACCCCTTGACTGTTAAGACAATGTCGGCATTTTGAAGCTCACTACCTAATTTTACATATTTTGTAATGCCTCATTCCAAGTGACAAACATTCCAGCGAAATTAGAGGGCCTCAGATCCTGTATACCCAGTCTATAATCCATCCATGGTAATGAATGTATGAAGCAGCAGATGTCACATCAGACTGTAGCATGATGTACTCCAGTACCCATAATGCAAGACAGTATTGCATTATGGGTGCTGTAGAAcatgcctcacacacacactgggagtaAGACACACTAGGATAAAAATCGAaccatttatttattaatttgacCACCGAGCAACAAATAATCACCAATCCTGAAATATCTGGACTCATCAGCCAGCCAGTGCAACAGTTACATTTAGATCAGTCAGCCACTACAAAGTTCACAGGGGCTTTAGTCTTGCACACCAGGGTTGGTATTCAGTGTCTCAGCGTATAATgcctgatctgggatcagttttgcctttcagATCACAAGACCGAGGGGACCGAatgctagatcagcacttctactcagACCCTTGTACGTACAGAACcagcttttttttttatagagTGTTTAGTATCAGTACAGATATCACACAATACATGAGTCCTTTACAAGAAAGACCATGAACTGATGGACAGATATACTTGTCTTTCAGGGGTTAAGTCCACTGGAAGATAAGCAATAAGCATGAGGCTGTGGAAGGAAGTCAGCATTGGTCAAAAGAAACAGTCCTTTCACTTTCAAAACTTGGGTTTGCTTTTGAACAAAAATGACTGCACTCAGTGGGGTTCATTGGGATCGATTGAGATGTACGTCATTTATTTTTGGTTGACAAAACAATGGCTTCTTCTAGGAATTGATCGAAAATAATCAGCCTGCGttgaaaatataaaataattacAAAACAAATTGTTCTAGTTCCGTATCTCAAAATGGATGGTGGCATATTGTTGTTCTGCCAAAGGTATGCTCAGGTTGGATTGTTAGAAAAATCACCAGCATTCAAAAATCTTTCAGAGAGCCAGTTGTAGAGAACCTTGGGACGTGTAGTCCTTTATGCCTGGATGGTGCTCTTAGAGAACCTTGGGACGTGTAGTCCTTTATGCCTGGATGGTGCTCTTAGCGCTAAAAGCCAGGTAATACACCAGGATGCCAATGAGAGCAGCCATAACCTCAGTAGGCACCCACGGGCCGTTCCACGCTCCCCTGTGATCTACATTGACAGAGAAAAGGGGCTGGATGGATTCTACATCCTCATTGTTCCTCTGGGCCTTGCGTAGAGAGCTGTAGGACTCCTCATCAAAGAACTTGACCTGGTATGTACCAGAGCTGGCCTGTTTGTGGGGCATGCTCCAGGACACCTGGTACTTGCCAACATCCTGGCCTCTAGTCACAGGGAACTGTCTTCCATTGACATCAGCATACAGAGCCACACTCTGGGCTCCATTGGCACAGGCCAGGCTGAGCTCCACGATGAATACGGACTCGGAAGAGATGACGGCATCAGAAGTGGTGTAGGCAGAGGGTGTAATCACAGGGTCTGAACAGCTCTCACCCGTGCACAGGCATACAAGAGCAAGAAACGCTGCTATTCTGGTCATCATGGTTGATTTATCAAAATGTGTTAACACGACTAAGAATTGTGGAACTAGTTATTTCGCGATATCACCAATTATTACAGCCACGTCTTCCTTCAAAAACCCTTTCAGACCGGTGCGCT
>TU947687
cggctttattaactcaatgataaataaatattgtttgcaaactgacatGTGACACGTATTAAATCCAAAATAACAGGCAAGCCCCTAAATATTTTgttgctaaaaatgtggggctcaaaacaggtggctCGGCCCCACTTACACTAAATGACAGGTCTCAACTGAAAACCTATACAGTATAACAGGCATCCAATTTCACAAATAAACCCCCCTACCCCTTGACTGTTAAGACAATGTCGGCATTTTGAAGCTCACTACCTAATTTTACATATTTTGTAATGCCTCATTCCAAGTGACAAACATTCCAGCGAAATTAGAGGGCCTCAGATCCTGTATACCCAGTCTATAATCCATCCATGGTAATGAATGTATGAAGCAGCAGATGTCACATCAGACTGTAGCATGATGTACTCCAGTACCCATAATGCAAGACAGTATTGCATTATGGGTGCTGTAGAAcatgcctcacacacacactgggagtaAGACACACTAGGATAAAAATCGAaccatttatttattaatttgacCACCGAGCAACAAATAATCACCAATCCTGAAATATCTGGACTCATCAGCCAGCCAGTGCAACAGTTACATTTAGATCAGTCAGCCACTACAAAGTTCACAGGGGCTTTAGTCTTGCACACCAGGGTTGGTATTCAGTGTCTCAGCGTATAATgcctgatctgggatcagttttgcctttcagATCACAAGACCGAGGGGACCGAatgctagatcagcacttctactcagACCCTTGTACGTACAGAACcagcttttttttttatagagTGTTTAGTATCAGTACAGATATCACACAATACATGAGTCCTTTACAAGAAAGACCATGAACTGATGGACAGATATACTTGTCTTTCAGGGGTTAAGTCCACTGGAAGATAAGCAATAAGCATGAGGCTGTGGAAGGAAGTCAGCATTGGTCAAAAGAAACAGTCCTTTCACTTTCAAAACTTGGGTTTGCTTTTGAACAAAAATGACTGCACTCAGTGGGGTTCATTGGGATCGATTGAGATGTACGTCATTTATTTTTGGTTGACAAAACAATGGCTTCTTCTAGGAATTGATCGAAAATAATCAGCCTGCGttgaaaatataaaataattacAAAACAAATTGTTCTAGTTCCGTATCTCAAAATGGATGGTGGCATATTGTTGTTCTGCCAAAGGTATGCTCAGGTTGGATTGTTAGAAAAATCACCAGCATTCAAAAATCTTTCAGAGAGCCAGTTGTAGAGAACCTTGGGACGTGTAGTCCTTTATGCCTGGATGGTGCTCTTAGAGAACCTTGGGACGTGTAGTCCTTTATGCCTGGATGGTGCTCTTAGCGCTAAAAGCCAGGTAATACACCAGGATGCCAATGAGAGCAGCCATAACCTCAGTAGGCACCCACGGGCCGTTCCACGCTCCCTGTGATCTACATTGACAGAGAAAAGGGGCTGGATGGATTCTACATCCTCATTGTTCCTCTGGGCCTGGAtaaaacaaacaacacaaaaacagACAAACATTTGCATATGGCTAAAAGCTACAGTATTTCTTTAATCAAATGGCAGGGGCACAAACAGACAAGCATGAATGCACCAGGGTTCCCGTTAGGCTG

Function

NR:

description
Translocon-associated protein subunit delta precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU947689 False 1951 lncRNA 0.44 6 67045237 67050383
TU947687 True 1629 lncRNA 0.42 2 67048601 67050383

Neighbor

gene id symbol gene type direction distance location
LOC110532718 fam3a coding downstream 16138 67020315 ~ 67029099 (-)
LOC110532715 LOC106572720 coding downstream 26268 66932925 ~ 67018969 (-)
LOC110532714 LOC106572710 coding downstream 116385 66889894 ~ 66928852 (-)
LOC110531242 LOC100380641 coding downstream 156752 66800041 ~ 66888485 (-)
l1cama LOC106572712 coding downstream 294112 66627920 ~ 66751125 (-)
LOC110531244 LOC106572707 coding upstream 18933 67069316 ~ 67133237 (-)
LOC110532720 LOC106572702 coding upstream 169545 67219928 ~ 67254596 (-)
LOC110532721 LOC106572706 coding upstream 208312 67258695 ~ 67263475 (-)
LOC110532723 LOC106572705 coding upstream 228466 67278849 ~ 67293936 (-)
LOC110532725 LOC106572703 coding upstream 247622 67298005 ~ 67322378 (-)
G833396 NA non-coding downstream 70673 66973726 ~ 66974564 (-)
G833380 NA non-coding downstream 123427 66921017 ~ 66921810 (-)
G833358 NA non-coding downstream 212698 66832055 ~ 66832539 (-)
G833355 NA non-coding downstream 243246 66801467 ~ 66801991 (-)
G833353 NA non-coding upstream 1155 67051538 ~ 67051977 (-)
G833432 NA non-coding upstream 6335 67056718 ~ 67056932 (-)
G833435 NA non-coding upstream 14020 67064403 ~ 67065636 (-)
G833436 NA non-coding upstream 16157 67066540 ~ 67067171 (-)
G833439 NA non-coding upstream 22994 67073377 ~ 67076686 (-)
G833029 NA other downstream 456557 66587412 ~ 66588680 (-)
G832991 myl6b other downstream 533671 66506278 ~ 66515999 (-)
LOC110531240 LOC106567037 other downstream 614468 66228457 ~ 66430917 (-)
LOC110532692 LOC106572690 other downstream 897552 66127916 ~ 66147685 (-)
G832503 NA other downstream 1009057 66035872 ~ 66036180 (-)
G833521 NA other upstream 128866 67179249 ~ 67185243 (-)
LOC110531246 LOC106572701 other upstream 398068 67327762 ~ 67455661 (-)
LOC110532727 LOC106572699 other upstream 492767 67543067 ~ 67560577 (-)
LOC110531249 LOC106572727 other upstream 978025 68028408 ~ 68079899 (-)
G834676 NA other upstream 1325275 68375658 ~ 68376157 (-)

Expression


Co-expression Network