G833516


Basic Information

Item Value
gene id G833516
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67181108 ~ 67182299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU947899
tcaatcaccagttgcacggaggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcacccaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaaccgttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgttttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtggaaaaaaaaaaaaatcatcatcagaccttccataaataattcgggccggcccccattgctaaaggtccgtagtagggtgcgccataaccggacatgaatatatggaacaccgctaaccgcatagagaaccgtgttttgggtgaccaggtgcacgttttcaatcaccagttgcacggagagagaaaaaagtaatcatacc
>TU947900
tcaatcaccagttgcacggaggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcacccaaggacggccctgacagagagggggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaaccgttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgttttaaaccgtccataaagcactcttggccggccccggcagagagagaaaaagaggggaaaagtgttgaaaaaaaaaaaaaaatcctaccttccataaataattgggaccggcccccattgctaaaggtccgtagtagggtgcgccataaccggacatgaatatatggaacaccgctaaccgcatagagaaccgtgttttgggtgaccaggtgcacgttttcaatcaccagttgcacggagagagaaaaaagtaatcatacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU947899 False 506 lncRNA 0.46 2 67181108 67182299
TU947900 True 510 lncRNA 0.45 2 67181108 67182299

Neighbor

gene id symbol gene type direction distance location
LOC110532719 ssrd coding upstream 131223 67045197 ~ 67049885 (+)
LOC110532716 LOC106572708 coding upstream 139014 67028029 ~ 67042094 (+)
LOC118966099 NA coding upstream 555283 66615300 ~ 66628653 (+)
LOC110532711 LOC106572715 coding upstream 587523 66582815 ~ 66593585 (+)
LOC110532709 myl6b coding upstream 665106 66506476 ~ 66516002 (+)
LOC110532722 LOC106572704 coding downstream 81265 67263564 ~ 67278303 (+)
LOC110532726 LOC106572718 coding downstream 298053 67480352 ~ 67580588 (+)
LOC110532729 LOC106572697 coding downstream 425374 67607673 ~ 67618114 (+)
tebp tebp coding downstream 440124 67622423 ~ 67625977 (+)
LOC110532731 LOC106572722 coding downstream 535878 67718177 ~ 67755296 (+)
G833512 NA non-coding upstream 11997 67168840 ~ 67169111 (+)
G833511 NA non-coding upstream 12321 67168432 ~ 67168787 (+)
G833508 NA non-coding upstream 13654 67167255 ~ 67167454 (+)
G833501 NA non-coding upstream 20533 67160337 ~ 67160575 (+)
G833495 NA non-coding upstream 23886 67157006 ~ 67157222 (+)
G833540 NA non-coding downstream 30029 67212328 ~ 67212606 (+)
G833569 NA non-coding downstream 75624 67257923 ~ 67258123 (+)
G833571 NA non-coding downstream 76441 67258740 ~ 67259561 (+)
G833573 LOC107696956 non-coding downstream 77908 67260207 ~ 67261100 (+)
G833582 NA non-coding downstream 113660 67295959 ~ 67298789 (+)
G833241 LOC106572720 other upstream 246621 66931688 ~ 66934487 (+)
G833139 LOC100380641 other upstream 359469 66814464 ~ 66821639 (+)
G833100 LOC106613929 other upstream 421435 66759278 ~ 66759673 (+)
LOC110532701 LOC106572669 other upstream 1380277 65754497 ~ 65801814 (+)
LOC110532705 LOC106567051 other upstream 1509625 65669353 ~ 65671483 (+)
G833541 NA other downstream 31121 67213420 ~ 67213884 (+)
G833906 LOC100194703 other downstream 438579 67620878 ~ 67621366 (+)
G834099 NA other downstream 866614 68048913 ~ 68049222 (+)
fance fance other downstream 1034779 68213202 ~ 68218960 (+)
G834228 NA other downstream 1085738 68268037 ~ 68268408 (+)

Expression


Co-expression Network