G833573 (LOC107696956)


Basic Information

Item Value
gene id G833573
gene name LOC107696956
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67260207 ~ 67261100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU947968
GCTTTGTGAACCAAAAAACTACAGATACAGATCAACAGGATAAAAACACACAAGTCACATTAAGAATGGTCTGAAAAACAATGTCTCACTGTATTCAAATTATTTAGTCTATACTTCTCTTGACAACAGGAGAGTGATGCGTATTTAGCATTCCATTACAACAACTAATCTGGAAATTCTTATCGAAGAGCAATATACAAATGACTACAAATGGAACCATCTTACTGAAGTCCAACACAGACATCCAGCACACTGCACTACCTTTTCCGGACATGAAGTGAGACATATTTGGCGTTGAAGTTTTCAATCATAGCTCGGCTGGCTTGGTCCATCAGCTTCTGAGCCAGACCCAGACGTCTGTGTGAGCGCTTGACAGCCAGGGATGTGATGTGACCATGGGGGACATCATCTGGATCCTCCTCCATCTTGGCCAAAACATATCCCACTATTTTGCCATTTTCATCCTCAGCGATGTAGGAGAGCTGAAAGACGAACAAAAAGGTGATAGATTAGATGCACAGACATCTAGTAACAACTAGCTAGACCTAAATCAAATGTTTCTCATTCCTCTTGATGAGTTAGATTACATTTTTGACTGATTGAATGCAAGAA

Function

NR:

description
hypothetical protein cypCar_00025211

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU947968 True 612 lncRNA 0.40 3 67260207 67261100

Neighbor

gene id symbol gene type direction distance location
LOC110532719 ssrd coding upstream 210322 67045197 ~ 67049885 (+)
LOC110532716 LOC106572708 coding upstream 218113 67028029 ~ 67042094 (+)
LOC118966099 NA coding upstream 634382 66615300 ~ 66628653 (+)
LOC110532711 LOC106572715 coding upstream 666622 66582815 ~ 66593585 (+)
LOC110532709 myl6b coding upstream 744205 66506476 ~ 66516002 (+)
LOC110532722 LOC106572704 coding downstream 2464 67263564 ~ 67278303 (+)
LOC110532726 LOC106572718 coding downstream 219252 67480352 ~ 67580588 (+)
LOC110532729 LOC106572697 coding downstream 346573 67607673 ~ 67618114 (+)
tebp tebp coding downstream 361323 67622423 ~ 67625977 (+)
LOC110532731 LOC106572722 coding downstream 457077 67718177 ~ 67755296 (+)
G833571 NA non-coding upstream 646 67258740 ~ 67259561 (+)
G833569 NA non-coding upstream 2084 67257923 ~ 67258123 (+)
G833540 NA non-coding upstream 47601 67212328 ~ 67212606 (+)
G833516 NA non-coding upstream 77908 67181108 ~ 67182299 (+)
G833512 NA non-coding upstream 91096 67168840 ~ 67169111 (+)
G833582 NA non-coding downstream 34859 67295959 ~ 67298789 (+)
G833588 NA non-coding downstream 45753 67306853 ~ 67307607 (+)
G833600 NA non-coding downstream 63239 67324339 ~ 67327959 (+)
G833606 adcy6 non-coding downstream 74337 67335437 ~ 67336202 (+)
G833676 NA non-coding downstream 177815 67438915 ~ 67439689 (+)
G833541 NA other upstream 46323 67213420 ~ 67213884 (+)
G833241 LOC106572720 other upstream 325720 66931688 ~ 66934487 (+)
G833139 LOC100380641 other upstream 438568 66814464 ~ 66821639 (+)
G833100 LOC106613929 other upstream 500534 66759278 ~ 66759673 (+)
LOC110532701 LOC106572669 other upstream 1459376 65754497 ~ 65801814 (+)
G833906 LOC100194703 other downstream 359778 67620878 ~ 67621366 (+)
G834099 NA other downstream 787813 68048913 ~ 68049222 (+)
fance fance other downstream 955978 68213202 ~ 68218960 (+)
G834228 NA other downstream 1006937 68268037 ~ 68268408 (+)
G834235 NA other downstream 1026115 68287215 ~ 68288525 (+)

Expression


Co-expression Network