G833837


Basic Information

Item Value
gene id G833837
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67520390 ~ 67522734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU948298
acaggtcagggttccatagccgcaggcagaacagttgaaactggagcagcagcatggccaggtggactggggacagcaaggagtcatcaggccaggtagtcctgaggcatggtcctacggctcaggtcctccgagagaaagaaagagaaagggataGTAAAAGagaaagcatacttaaattcacacaggaaacCGGATAataacaggagaaatactccagatataacagactgaccttaGCCCCCCGGCATATaatctactgcagcataaatactggaggctgagacaggaggggtcaggagacactgcggCCCTGTTCGACGatgcccccggacagggccaaacaggcaggatatcaccccatccactttgccaaagcacagcccccaaacCACTAGAGGgaaatcttcaaccaccaacctactatcTTGAGACAAGGCTTAGTATTGCGTATTGTGCACAGCATCATATGAAAGGGAGGACGTTGTGCACAGCACCATACGAAAGGGATGACGTTGTGCACAGCATCATACGAAAGGGAGGACGTTGTGCACCATTTTCACTCACCCGTTTTGGCTCATGAGcgctactttcaaaactactggttAAATTATAAAACACCTTTATAAGGTTTCTTTAAAGGAGCTACATGTATGTTTTTTTGCATAGTAGTACAGACCTGAAGCTTTCCCAAGAAAACACGAGCTTTAAGCACAGAGCAGCACGCATCTCAGTACAGAAAAACACTCACATAAGTGTTACTTTATCATTACATAAAACTATACATTAATTAAATGAATTACTGCCACAGTTAATGAAATGTATGTGCATGAcaacatatttattttttacaagtaGAAGGACATCTCATATTTATTTTACAAGTAAAAGGAACGTCATATTTATTTTACAAGAACATATCATATTTCTTTCTAAGTAGAAGGGCTTTCCAGGACCATAATAAGTCACTATAGCTTTTCACTTGTCATTCTGAAGAGAAAATGAATGGATGACAATCACATTATGTATTCAGTATTTATGTATCATTACATAtttgtatatattgctattataaactggttaccaactttaaaaatatatatgttttgtcatacccgtggtatatggtctgatataccacggctgtcagacaatcagcattcagggctcgaaccacccagtttataattaattCTCAGTTCTTCCTCAGTAATATTAAGGTGCACAAAATCTACAAATGTTGACAGACAAAATCTAGGAAATGTACTGTAGACCTACTTATATGCTCATGTCTTCAAAGCCTCATAAGcatgtatttatatataaaaagtgtgttttctttctttttagtATGAAACACTGAACGTgtccactacttttgagcagagccATGTGCCCTAGTCAAACGATGTGCACTACAGGGGACAGGAGGCCGTTCAGATGCAACCACTGTAATTATTTCCATTGATTGACCTCTAACctaacatttttgcagttttgAGAGACATTATAAGGCTTGAgaactacacaacacacacacacacatgcaccaacCAAGCACAGTTTCACTGCTGAAACACAACAATCTGAATCAATCTCACTTGCATTCCATTTTTATTGCAggtaatttatatatattttttaaacaagtaaaaTCTTTGGATATCCGAAGCACAATCTTTTACTATTATAATTTTCAATAGTTTTTCCCCCGACATACCTAAATTCTGTATGCAATACAAAGTCTTCTAGCTTCGACAAGACAGTAGCTGAACCTATCAAGACTCCTCTTCTGTTTAAGACGGGGTACAAActgcactatttttatttttatgtctgATTTATATTTATACTGCAATACATGCACTAAATGTAACTCTGCTGTACCCACCACCACCTCCAATACTGA
>TU948299
TGCACAGCATCATACGAAAGGGATGACGTTGAGCACAGCATCATACGAAAGGGAGGACGTTGTGCACAGCATCATACGAAAGGGAGGACGTTGTGCACCATTTTCACTCACCCGTTTTGGCTCATGAGcgctactttcaaaactactggttAAATTATAAAACACCTTTATAAGGTTTCTTTAAAGGAGCTACATGTATGTTTTTTTGCATAGTAGTACAGACCTGAAGCTTTCCCAAGAAAACACGAGCTTTAAGCACAGAGCAGCACGCATCTCAGTACAGAAAAACACTCACATAAGTGTTACTTTATCATTACATAAAACTATACATTAATTAAATGAATTACTGCCACAGTTAATGAAATGTATGTGCATGAcaacatatttattttttacaagtaGAAGGACATCTCATATTTATTTTACAAGTAAAAGGAACGTCATATTTATTTTACAAGAACATATCATATTTCTTTCTAAGTAGAAGGGCTTTCCAGGACCATAATAAGTCACTATAGCTTTTCACTTGTCATTCTGAAGAGAAAATGAATGGATGACAATCACATTATGTATTCAGTATTTATGTATCATTACATAtttgtatatattgctattataaactggttaccaactttaaaaatatatatgttttgtcatacccgtggtatatggtctgatataccacggctgtcagacaatcagcattcagggctcgaaccacccagtttataattaattCTCAGTTCTTCCTCAGTAATATTAAGGTGCACAAAATCTACAAATGTTGACAGACAAAATCTAGGAAATGTACTGTAGACCTACTTATATGCTCATGTCTTCAAAGCCTCATAAGcatgtatttatatataaaaagtgtgttttctttctttttagtATGAAACACTGAACGTgtccactacttttgagcagagccATGTGCCCTAGTCAAACGATGTGCACTACAGGGGACAGGAGGCCGTTCAGATGCAACCACTGTAATTATTTCCATTGATTGACCTCTAACctaacatttttgcagttttgAGAGACATTATAAGGCTTGAgaactacacaacacacacacacacatgcaccaacCAAGCACAGTTTCACTGCTGAAACACAACAATCTGAATCAATCTCACTTGCATTCCATTTTTATTGCAggtaatttatatatattttttaaacaagtaaaaTCTTTGGATATCCGAAGCACAATCTTTTACTATTATAATTTTCAATAGTTTTTCCCCCGACATACCTAAATTCTGTATGCAATACAAAGTCTTCTAGCTTCGACAAGACAGTAGCTGAACCTATCAAGACTCCTCTTCTGTTTAAGACGGGGTACAAActgcactatttttatttttatgtctgATTTATATTTATACTGCAATACATGCACTAAATGTAACTCTGCTGTACCCACCACCACCTCCAATACTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106591608 isoform X3

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU948298 False 1909 lncRNA 0.39 3 67520390 67522734
TU948299 True 1453 lncRNA 0.35 3 67521094 67522734

Neighbor

gene id symbol gene type direction distance location
LOC110532726 LOC106572718 coding upstream 2393 67480352 ~ 67580588 (+)
LOC110532722 LOC106572704 coding upstream 242087 67263564 ~ 67278303 (+)
LOC110532719 ssrd coding upstream 470505 67045197 ~ 67049885 (+)
LOC110532716 LOC106572708 coding upstream 478296 67028029 ~ 67042094 (+)
LOC118966099 NA coding upstream 894565 66615300 ~ 66628653 (+)
LOC110532729 LOC106572697 coding downstream 84939 67607673 ~ 67618114 (+)
tebp tebp coding downstream 99689 67622423 ~ 67625977 (+)
LOC110532731 LOC106572722 coding downstream 195443 67718177 ~ 67755296 (+)
LOC110533034 LOC106572723 coding downstream 245606 67768340 ~ 67772836 (+)
LOC110533035 LOC106572734 coding downstream 382297 67905031 ~ 67911226 (+)
G833843 NA non-coding upstream 41241 67478881 ~ 67479149 (+)
G833842 NA non-coding upstream 43305 67476821 ~ 67477085 (+)
G833836 NA non-coding upstream 53511 67466667 ~ 67466879 (+)
G833676 NA non-coding upstream 80701 67438915 ~ 67439689 (+)
G833606 adcy6 non-coding upstream 184188 67335437 ~ 67336202 (+)
G833868 NA non-coding downstream 17274 67540008 ~ 67599092 (+)
G833880 NA non-coding downstream 32647 67555381 ~ 67555829 (+)
G833888 NA non-coding downstream 62550 67585284 ~ 67586292 (+)
G833905 NA non-coding downstream 97578 67620312 ~ 67620528 (+)
G833908 LOC106572695 non-coding downstream 109638 67632372 ~ 67633330 (+)
G833541 NA other upstream 306506 67213420 ~ 67213884 (+)
G833241 LOC106572720 other upstream 585903 66931688 ~ 66934487 (+)
G833139 LOC100380641 other upstream 698751 66814464 ~ 66821639 (+)
G833100 LOC106613929 other upstream 760717 66759278 ~ 66759673 (+)
LOC110532701 LOC106572669 other upstream 1719559 65754497 ~ 65801814 (+)
G833906 LOC100194703 other downstream 98144 67620878 ~ 67621366 (+)
G834099 NA other downstream 526179 68048913 ~ 68049222 (+)
fance fance other downstream 694344 68213202 ~ 68218960 (+)
G834228 NA other downstream 745303 68268037 ~ 68268408 (+)
G834235 NA other downstream 764481 68287215 ~ 68288525 (+)

Expression


Co-expression Network