G833868


Basic Information

Item Value
gene id G833868
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67540008 ~ 67599092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU948332
ATGTCCAAAATAGAATTCAAACAAATATACATCTCAACCAAAAAAGCTACAAAAATAATAATAGCTATAATAACTATCAAATAAATattcacatcaacaacaacatattTGTCTTTCGTCGTTTGAATCAAACATTTCCCTGCGACATTCTTTAATGTCTTTAAAACATATTATAAAATAAGATTTGTACAATCAAACTATAACAGCGCATGCTAGGAGTAGGACTGCACTAATGTACCATACACTCGCTGCACTACACAATGACTGCCTGCATGTTAACTGATATGATCCATGAATTGTTTCTATATCAAAGACCTGAGCCCCTGTATGAGTTTGGAACTTGCAATTATAAGGAAACTCAAGAAAAAATATTCTGAATCCAAATTCCGATCAACCCTTGAGGTAGAAGCAGAATCTGCACTTCCATTGACTGTGGAAATGTCTCCTTGTACGTTACGCCCTCCTTTACTCCCTATCTGTGCAACGAACCAACCGATGAGCCATTCGGGAGTCTGGATTGGTTTCCTGTGTTGAACTGTTGCTAGGCAATGCTGAGGATTTCCAGTGTGTGACCAAGGAACTAGAGCCTTTGTGCAAATCAAATCACAGACTGACTGACCACCATGGGGGTCGTCCACAGCTCACCACATAGGTTAACAAACActgtctcagtcacacacacatacacaaaaggATTCAATTCAAGCTTTAATACCAAAATAAAGAGACACAAACCCCAAAATGAATCATGAAAAAAACACCTTCTTTCTTTGGCCAGCCTGcatgattttattttattagtaGTTCCTCTACCTCCCTAAATATTTCCAGATATTATATTTCCATATACCCTAGCCCCTTTTCACACATTGATTGTTAAAAGTGTTAAAAGTTAGGAGGCTTCCACATAACGTACCCCAAAGGAAAAAGCTTCAATAGTGCCAACAGTGACTAGAGCCGAACGTTTAAAACCAGATTCTCTCAGTCTCATTTCTTTAACTCACTCGTCTCCCAGCGATACTTCACAACTGATAGCATAGACTCACTGACATCTTCAAATAGCATTATTCCTCTTCATACTCAAATTCCAAACTCTTTAGTGGCACAGCGAGAGATGTCATTGGTTACCTTTACATACCAGTGGCTACTGACGAGACAGAAGCAGGGAAAGTGGAACCAGGTCGGACGCCATCTTGATTCTACAGCAGAAAGGATGGTTCAGTTTGTTTtgctatactgtatgtatatccATGGAGTAGCAGCAGGATTTATTGGCCACTCGATCAGCTGACTTTGCATCACATTAAATCATTATTGCTTGATAGTTAAAGCCGAGATAGATCAATGCTGTActgcacacacacaattataacCAAGAAGCAAACTATTAAAGCTGAAAAAGGGTCCTAGTTCAGTGACACATTGGACTGGACTGCCCTCCATGATGCTGGGACTTGAGGTGTAACAGAACAacgagagaaagggaaggaagaGTAGAAACATTTAGGAAGAGAGGAGACTAAATGAAGTGGAGGGCTACATTGTTGAACATTAAATAAATCAACAGCCATACTTCCAAAAATCAGGATGAAACTTAGGGGTTATTATTTGAATGGTGTAATGGAAACTGTATACTGTTTGATCATCGTTGATTATCAAAATACCAATACTGTGATGCTACACGCTCTTCTGTAGTAGGATTTCGTGAACTGGACATCACATTTCCCCAGTGGATTCAGCTAAGTTTTTAAGCAGCATCTTCTAGTTTCAAACAGACAGTCCTGTAAATAATCACCTCAAAGAATTGCAACACTGACCTGCCAACCATTACCAGACGTAACTTCACAGATCTCTTGACAGAACTGCATTAAACTGTGTTGTGCCTATGGCCCCGATTAAAACTATACCCCACTTCCTGGAagtgtttttttcttcatcaaaGCACTCCTCATCAGACAATTCTCAGCTACAATCACATTGTTTTCTATCTCTGGAAGCACCAGTACATTCACATTGTTTTCTATCTCTGGAAGCACCAGTACATTCACATTGTTTTCTATCTCTGGAAGCACCAGTACATTCACATTGTTTTCTATCTCTGGAAGCACCAGTACATTCACATTGTTTTCTATCTCTGGAAGCACCAGTACATTATCATTGTTTTGTGACTTATCCATCCAATATCCATCTGTTCTGTACTTTTCCTCTGTAACCTGGTACTCCACTGACTGAGAGCAGATGGCTCacactggtgtctgtctgtctgtgtgtatatctgtctgtctgtctgcctgcttgcctgcctgtctgcttgtCCGTTCGTCCgcctgcctgcttgtctgtctgcctgacacCTTCCTGTTCACGCAATCAGCCCTTATCCATcaagtcctcctctcctcacggCCGAGACAATGAGAAGTGTAATGGCCCTCTGTTCATGCTATGATCCCATCAAacactcctctctccacatctctctcaaTCAGTCAGCCCCCGTTGGGCCTTAATCAAGAAGAGCACAAACACTGTTTGACCACTGATTTGCTCATGTTGCTACACCTTATAGTTGACACTCTGTAATACAGAGGGGATACAATTATCAGTAATGTCTGAGATATTATCATGCTCAATTTAGTTTGTTAAATAGGTATTTAATTGTCTTGAGAGGCATTTTTACATCCCAATGTTAAAGCTTTGTCACACGTTGCACATTTCTCCAATTTGGACAAATCAACATGTTCCTAAATAGTAGTGATGTCACACCATCATGGTTGCATACTGTAACAGGTGAGAAAAATGGTTCTCTGATGATCAAAAAGCCAAGTTACAGTAGTGAAAAAGATGAGATATGCACTGAAGAGTAGTTCAGGACAAGGTGTCCACCTGTTCTGAGTTTCTTTGACTTTGGGGGCGGGGGGGTCAGCATGGAGGAAGAGCCTTCTCATGATAAAGCTATCGTGATGAAACCAACCACACCTTCCCCGAACCAAACAGTCAAGGGGTTCTGGGGAATCGGAGCAGCGTGTTGGAAGGGAgtgaaagcccccccccccccccccccccgcccgggTCTCCACTCACATGATGGAGCAGCTCTTGGTCTTCTCCTTCTTGAAGGTGGAGGAGAGCAGCTCGGAGCGGCTGGGGAGATGGAGGAGCCTCTTGGATAAGCGTTGAGTGGGGCTGGTCTTGGGGAGGGGCTGGAGCTTGTTGATGCAAGCCAGAGAGGCCGTACGGAACACTCCAGGTAGGCCTCAGTACcaagctgcttggcc
>TU948333
ATGTCCAAAATAGAATTCAAACAAATATACATCTCAACCAAAAAAGCTACAAAAATAATAATAGCTATAATAACTATCAAATAAATattcacatcaacaacaacatattTGTCTTTCGTCGTTTGAATCAAACATTTCCCTGCGACATTCTTTAATGTCTTTAAAACATATTATAAAATAAGATTTGTACAATCAAACTATAACAGCGCATGCTAGGAGTAGGACTGCACTAATGTACCATACACTCGCTGCACTACACAATGACTGCCTGCATGTTAACTGATATGATCCATGAATTGTTTCTATATCAAAGACCTGAGCCCCTGTATGAGTTTGGAACTTGCAATTATAAGGAAACTCAAGAAAAAATATTCTGAATCCAAATTCCGATCAACCCTTGAGGTAGAAGCAGAATCTGCACTTCCATTGACTGTGGAAATGTCTCCTTGTACGTTACGCCCTCCTTTACTCCCTATCTGTGCAACGAACCAACCGATGAGCCATTCGGGAGTCTGGATTGGTTTCCTGTGTTGAACTGTTGCTAGGCAATGCTGAGGATTTCCAGTGTGTGACCAAGGAACTAGAGCCTTTGTGCAAATCAAATCACAGACTGACTGACCACCATGGGGGTCGTCCACAGCTCACCACATAGGTTAACAAACActgtctcagtcacacacacatacacaaaaggATTCAATTCAAGCTTTAATACCAAAATAAAGAGACACAAACCCCAAAATGAATCATGAAAAAAACACCTTCTTTCTTTGGCCAGCCTGcatgattttattttattagtaGTTCCTCTACCTCCCTAAATATTTCCAGATATTATATTTCCATATACCCTAGCCCCTTTTCACACATTGATTGTTAAAAGTGTTAAAAGTTAGGAGGCTTCCACATAACGTACCCCAAAGGAAAAAGCTTCAATAGTGCCAACAGTGACTAGAGCCGAACGTTTAAAACCAGATTCTCTCAGTCTCATTTCTTTAACTCACTCGTCTCCCAGCGATACTTCACAACTGATAGCATAGACTCACTGACATCTTCAAATAGCATTATTCCTCTTCATACTCAAATTCCAAACTCTTTAGTGGCACAGCGAGAGATGTCATTGGTTACCTTTACATACCAGTGGCTACTGACGAGACAGAAGCAGGGAAAGTGGAACCAGGTCGGACGCCATCTTGATTCTACAGCAGAAAGGATGGTTCAGTTTGTTTtgctatactgtatgtatatccATGGAGTAGCAGCAGGATTTATTGGCCACTCGATCAGCTGACTTTGCATCACATTAAATCATTATTGCTTGATAGTTAAAGCCGAGATAGATCAATGCTGTActgcacacacacaattataacCAAGAAGCAAACTATTAAAGCTGAAAAAGGGTCCTAGTTCAGTGACACATTGGACTGGACTGCCCTCCATGATGCTGGGACTTGAGGTGTAACAGAACAacgagagaaagggaaggaagaGTAGAAACATTTAGGAAGAGAGGAGACTAAATGAAGTGGAGGGCTACATTGTTGAACATTAAATAAATCAACAGCCATACTTCCAAAAATCAGGATGAAACTTAGGGGTTATTATTTGAATGGTGTAATGGAAACTGTATACTGTTTGATCATCGTTGATTATCAAAATACCAATACTGTGATGCTACACGCTCTTCTGTAGTAGGATTTCGTGAACTGGACATCACATTTCCCCAGTGGATTCAGCTAAGTTTTTAAGCAGCATCTTCTAGTTTCAAACAGACAGTCCTGTAAATAATCACCTCAAAGAATTGCAACACTGACCTGCCAACCATTACCAGACGTAACTTCACAGATCTCTTGACAGAACTGCATTAAACTGTGTTGTGCCTATGGCCCCGATTAAAACTATACCCCACTTCCTGGAagtgtttttttcttcatcaaaGCACTCCTCATCAGACAATTCTCAGCTACAATCACATTGTTTTCTATCTCTGGAAGCACCAGTACATTCACATTGTTTTCTATCTCTGGAAGCACCAGTACATTCACATTGTTTTCTATCTCTGGAAGCACCAGTACATTCACATTGTTTTCTATCTCTGGAAGCACCAGTACATTCACATTGTTTTCTATCTCTGGAAGCACCAGTACATTATCATTGTTTTGTGACTTATCCATCCAATATCCATCTGTTCTGTACTTTTCCTCTGTAACCTGGTACTCCACTGACTGAGAGCAGATGGCTCacactggtgtctgtctgtctgtgtgtatatctgtctgtctgtctgcctgcttgcctgcctgtctgcttgtCCGTTCGTCCgcctgcctgcttgtctgtctgcctgacacCTTCCTGTTCACGCAATCAGCCCTTATCCATcaagtcctcctctcctcacggCCGAGACAATGAGAAGTGTAATGGCCCTCTGTTCATGCTATGATCCCATCAAacactcctctctccacatctctctcaaTCAGTCAGCCCCCGTTGGGCCTTAATCAAGAAGAGCACAAACACTGTTTGACCACTGATTTGCTCATGTTGCTACACCTTATAGTTGACACTCTGTAATACAGAGGGGATACAATTATCAGTAATGTCTGAGATATTATCATGCTCAATTTAGTTTGTTAAATAGGTATTTAATTGTCTTGAGAGGCATTTTTACATCCCAATGTTAAAGCTTTGTCACACGTTGCACATTTCTCCAATTTGGACAAATCAACATGTTCCTAAATAGTAGTGATGTCACACCATCATGGTTGCATACTGTAACAGGTGAGAAAAATGGTTCTCTGATGATCAAAAAGCCAAGTTACAGTAGTGAAAAAGATGAGATATGCACTGAAGAGTAGTTCAGGACAAGGTgctgttctgag

Function

NR:

description
uncharacterized protein LOC111197029

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU948332 False 3278 lncRNA 0.43 2 67540008 67543322
TU948333 True 2891 lncRNA 0.40 2 67540008 67599092

Neighbor

gene id symbol gene type direction distance location
LOC110532726 LOC106572718 coding upstream 22011 67480352 ~ 67580588 (+)
LOC110532722 LOC106572704 coding upstream 261705 67263564 ~ 67278303 (+)
LOC110532719 ssrd coding upstream 490123 67045197 ~ 67049885 (+)
LOC110532716 LOC106572708 coding upstream 497914 67028029 ~ 67042094 (+)
LOC118966099 NA coding upstream 914183 66615300 ~ 66628653 (+)
LOC110532729 LOC106572697 coding downstream 8581 67607673 ~ 67618114 (+)
tebp tebp coding downstream 23331 67622423 ~ 67625977 (+)
LOC110532731 LOC106572722 coding downstream 119085 67718177 ~ 67755296 (+)
LOC110533034 LOC106572723 coding downstream 169248 67768340 ~ 67772836 (+)
LOC110533035 LOC106572734 coding downstream 305939 67905031 ~ 67911226 (+)
G833837 NA non-coding upstream 17274 67520390 ~ 67522734 (+)
G833843 NA non-coding upstream 60859 67478881 ~ 67479149 (+)
G833842 NA non-coding upstream 62923 67476821 ~ 67477085 (+)
G833836 NA non-coding upstream 73129 67466667 ~ 67466879 (+)
G833676 NA non-coding upstream 100319 67438915 ~ 67439689 (+)
G833905 NA non-coding downstream 21220 67620312 ~ 67620528 (+)
G833908 LOC106572695 non-coding downstream 33280 67632372 ~ 67633330 (+)
G833910 NA non-coding downstream 37156 67636248 ~ 67636799 (+)
G833918 NA non-coding downstream 67964 67667056 ~ 67667801 (+)
G833541 NA other upstream 326124 67213420 ~ 67213884 (+)
G833241 LOC106572720 other upstream 605521 66931688 ~ 66934487 (+)
G833139 LOC100380641 other upstream 718369 66814464 ~ 66821639 (+)
G833100 LOC106613929 other upstream 780335 66759278 ~ 66759673 (+)
LOC110532701 LOC106572669 other upstream 1739177 65754497 ~ 65801814 (+)
G833906 LOC100194703 other downstream 21786 67620878 ~ 67621366 (+)
G834099 NA other downstream 449821 68048913 ~ 68049222 (+)
fance fance other downstream 617986 68213202 ~ 68218960 (+)
G834228 NA other downstream 668945 68268037 ~ 68268408 (+)
G834235 NA other downstream 688123 68287215 ~ 68288525 (+)

Expression


Co-expression Network