G833908 (LOC106572695)


Basic Information

Item Value
gene id G833908
gene name LOC106572695
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67632372 ~ 67633330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU948382
TTGAGTGCCAGGTTGCCCCTCATGTTGTTGGGGGTGACCGAGTAGAGCACAGCGGCCCCAGCCAGCGCCCCCAGACACTGGGCCACGATGTAGAAGACAGCACGGAACAGGGACATCTGGGAGCCAATCAAGTAGGCGAAGGTGACAGCCGGGTTGATGTGTCCACCACTGATGTGACCGATGGACTGGATGAGGGTGGCAGCGGCCAGGCCGAAGCAGAAAGCCACGTGGAGAACGTTGTGGGACCCGGTGGTCCAGCGCAGAGCCGCCCCCAGACCGAAGAACACAAAGAACATGGTGCCATAGAACTCAGCGAACACTGCCCGCCAGAACGACATGGAACGGAACTCCCACATGGTGGCCAAAAAGTCAAGAGGCTAGCCCAAATGGCTATCCCAAATGTGTATTCTCCTTTAGAGTGAGTTTAGCTCTGCTTACCGTATCAATAATGACTTATCTCAGTGATGCCTTCAAGGTAAGATTAAAAAAAGAGAGCAAACTTCAAAGCAAAACTGGCCCCTAAACCTAAAGATGCTTCCGCACGTAAACAACAGTTCCACATGCAACTCTCTAGGAGTCACTAACTTTACTGACTTCCAATGATCTGCAATGTTGCTTTCTGTAAGCTGTTTTCAGTCCAGTTATAGAAAACCGCgtcctgtctgtgtggatggagcgTGGGTCTCTATGCGTCTATATGCCAACCCTGCTGGTCCTGTCTGTGTGGAGCGGAGCgtgggtctCTGTGCGTCTATATGCCAACCCTGCTGGTCCTGTCTTTGTGGAGCGGAGCGTGGGTCTCTGTGCGTCTATATGCCAACCCTGCTCGTCCTGTCTGTGTGGAGCGGAGTGTTGGTATGCCAACCCTGCTGGTGGTTAGTAGAGAAAAGGATGTCCTGCA
>TU948384
TTGAGTGCCAGGTTGCCCCTCATGTTGTTGGGGGTGACCGAGTAGAGCACAGCGGCCCCAGCCAGCGCCCCCAGACACTGGGCCACGATGTAGAAGACAGCACGGAACAGGGACATCTGGGAGCCAATCAAGTAGGCGAAGGTGACAGCCGGGTTGATGTGTCCACCACTGATGTGACCGATGGACTGGATGAGGGTGGCAGCGGCCAGGCCGAAGCAGAAAGCCACGTGGAGAACGTTGTGGGACCCGGTGGTCCAGCGCAGAGCCGCCCCCAGACCGAAGAACACAAAGAACATGGTGCCATAGAACTCAGCGAACACTGCCCGCCAGAACGACATGGAACGGAACTCCCACATGGTGGCCAAAAAGTCAAGAGGCTAGCCCAAATGGCTATCCCAAATGTGTATTCTCCTTTAGAGTGAGTTTAGCTCTGCTTACCGTATCAATAATGACTTATCTCAGTGATGCCTTCAAGGTAAGATTAAAAAAAGAGAGCAAACTTCAAAGCAAAACTGGCCCCTAAACCTAAAGATGCTTCCGCACGTAAACAACAGTTCCACATGCAACTCTCTAGGAGTCACTAACTTTACTGACTTCCAATGATCTGCAATGTTGCTTTCTGTAAGCTGTTTTCAGTCCAGTTATAGAAAACCGCgtcctgtctgtgtggatggagcgTGGGTCTCTATGCGTCTATATGCCAACCCTGCTGGTCCTGTCTGTGTGGAGCGGAGCgtgggtctctgtgtgtctatatGGCAACCCTGCTCGTCCTGTCTGTGTGGAGCGGAGCGTGGGTCTCTGTGCGTCTATATGCCAACCCTGCTCGTCCTGTCTGTGTGGAGCGGAGTGTTGGTATGCCAACCCTGCTGGTGGTTAGTAGAGAAAAGGATGTCCTGCA

Function

NR:

description
lens fiber major intrinsic protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU948382 False 901 lncRNA 0.53 2 67632372 67633330
TU948384 True 901 lncRNA 0.53 2 67632372 67633330

Neighbor

gene id symbol gene type direction distance location
tebp tebp coding upstream 6395 67622423 ~ 67625977 (+)
LOC110532729 LOC106572697 coding upstream 14258 67607673 ~ 67618114 (+)
LOC110532726 LOC106572718 coding upstream 114375 67480352 ~ 67580588 (+)
LOC110532722 LOC106572704 coding upstream 354069 67263564 ~ 67278303 (+)
LOC110532719 ssrd coding upstream 582487 67045197 ~ 67049885 (+)
LOC110532731 LOC106572722 coding downstream 84847 67718177 ~ 67755296 (+)
LOC110533034 LOC106572723 coding downstream 135010 67768340 ~ 67772836 (+)
LOC110533035 LOC106572734 coding downstream 271701 67905031 ~ 67911226 (+)
LOC118965940 LOC106572726 coding downstream 289327 67922657 ~ 67934517 (+)
LOC110532736 LOC106572735 coding downstream 466363 68099693 ~ 68111105 (+)
G833905 NA non-coding upstream 11844 67620312 ~ 67620528 (+)
G833868 NA non-coding upstream 33280 67540008 ~ 67599092 (+)
G833888 NA non-coding upstream 46080 67585284 ~ 67586292 (+)
G833880 NA non-coding upstream 76543 67555381 ~ 67555829 (+)
G833910 NA non-coding downstream 2918 67636248 ~ 67636799 (+)
G833918 NA non-coding downstream 33726 67667056 ~ 67667801 (+)
G833942 NA non-coding downstream 96774 67730104 ~ 67730382 (+)
G833944 NA non-coding downstream 98519 67731849 ~ 67732048 (+)
G833906 LOC100194703 other upstream 11006 67620878 ~ 67621366 (+)
G833541 NA other upstream 418488 67213420 ~ 67213884 (+)
G833241 LOC106572720 other upstream 697885 66931688 ~ 66934487 (+)
G833139 LOC100380641 other upstream 810733 66814464 ~ 66821639 (+)
G833100 LOC106613929 other upstream 872699 66759278 ~ 66759673 (+)
G834099 NA other downstream 415583 68048913 ~ 68049222 (+)
fance fance other downstream 583748 68213202 ~ 68218960 (+)
G834228 NA other downstream 634707 68268037 ~ 68268408 (+)
G834235 NA other downstream 653885 68287215 ~ 68288525 (+)
LOC110531253 LOC106572751 other downstream 833229 68451084 ~ 68470509 (+)

Expression


Co-expression Network