G834361


Basic Information

Item Value
gene id G834361
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67791089 ~ 67793357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU948917
tagattgctgattttttatatatttttattattatccattttagaataaggctgtaacgtaacaaaatgtggaaaaagtcaaggggtctgaatactttccgaaagcccTGTATATACATATTACAAAATAACACTGTTTGTTTGTCACATTTGATTGATGTGTAACACGTTCAGTCTAAAACTGGTTGGTAATTCAGcaccctactgtatgtgttgggaAATAGCGGATACATTGTCACTGGAGCTGCTGCCATGATATTACCATGATGATGAGAGGTTTATGCTACCAGCACATTTCCCACTGTTTTCTGCAAACTTGTCAAACTTTTTTCAACTGCAAtcaataaacaaacacacacatacacattcacacagacacacagcaattCAACCTGACTAATCAGTCATTTGTCCAAATTAGATAGTCCGTTGGGTGTGACTGCCTCTTCCAGTGAAGATGGCGTCTATCCCAACCAAGACCTAGTATCTACTCATACATCCACAAGGCCTAAAAGACCTAGTATCTATAGATACATCCAAGGCCTAAAATACCTAGTATCTACCCATGCATCCACAAGCCTAAAAGACCTAGTATCTACCCATACATCCACAAGCCATATTAGGCTTATCTATATACTGTAACCACCCTACACACACTAGGATCTAGTACATCTATCCACATACACAAGATCTGGTCCAAtgaatatatctctctctctacccataaaTACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAATATATCTCTATTTCTACCCATAAATACAGCCACATGGTCTGGTCCAATCAATATATCTCTTTCTACCCATAAATACAGCCACACGGTCTGGTCCAAtcaatCTATTTCTCTCTACCCATAAATACAGCCACATGGTCTGGTCCAATCAATCTATTTCTCTCTACCCATAAATACAGCCTGGTAGGCCTAACTACCCATCTCCATCCATACAGCCACACCATATCAATGCAATTACAGTTCAGCACTTCAATGTCTGATACTTTGTGCTTCAAACATCTCTCACTTTAACTTTGAATGGTTTGTTTCTAATCTAGTGTTATAACTCCACTCATTGGCATGTGCCCTTTTCAGCTTTTTCTGTGTTTTTTTGGAAGATGATGATACCACACTTAAATGTTCAAAACTGTGGAAGGAGGGAATGGGGTGGGGTGTGCGtaaggggtggggtggggtaaaTTGAAAAGAATGAAGGACAACGTCTATCAGGGACTCGAGGCTACCTAACAGCATCGTTTGTCCATACGATACGATGAGAGGGGTCAGAACTAATACTGCCGGGGATCAGATTATCTTAACAACTATTAACAAATAACTGCCCTCTTCTCTTCATCCTCTAGATAGACTTTTGATGTTACCTTACAAAACAGCAGTCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATTCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGAAATCCAACTCAAAACAGCAATCCAACTCAAAACAACAATCCAACTCAAAACAGCAGTTTCTTGTGTTCATGTGTGTTACCTTGTGAAAAAGCAGCTTGCCTTCTATATCTCTGTTCTTTCCATCTGAAATTTATTTTTGTATCAATATTAAATTAATGACATAATGGGGACTCTTTTTTTTTAGCATGGATTTATTAtatacttttaaaaatgttttgctgaAAAATAGTTTTTGAAAGTGCTTTTCAAACTGTCGTTTATCATTTGAACGCTGTGATATTAAAGATACATGCAGTATGGTGTTAGTGATACACAACCATTTCGGCTCTTAGTAAGAACTCATGAAAGATTGTCTTCATTTGAACACAAACATTTGTATGACCAATAAAGCAGCCTTCCAGTTACAAGCT
>TU948918
GACAACGTCTATCAGGGACTCGAGGCTACCTAACAGCATCGTTTGTCCATACGATACGATGAGAGGGGTCAGAACTAATACTGCCGGGGATCAGATTATCTTAACAACTATTAACAAATAACTGCCCTCTTCTCTTCATCCTCTAGATAGACTTTTGATGTTACCTTACAAAACAGCAGTCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATTCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAACAATCCAACTCAAAACAGCAGTTTCTTGTGTTCATGTGTGTTACCTTGTGAAAAAGCAGCTTGCCTTCTATATCTCTGTTCTTTCCATCTGAAATTTATTTTTGTATCAATATTAAATTAATGACATAATGGGGACTCTTTTTTTTTAGCATGGATTTATTAtatacttttaaaaatgttttgctgaAAAATAGTTTTTGAAAGTGCTTTTCAAACTGTCGTTTATCATTTGAACGCTGTGATATTAAAGATACATGCAGTATGGTGTTAGTGATACACAACCATTTCGGCTCTTAGTAAGAACTCATGAAAGATTGTCTTCATTTGAACACAAACATTTGTATGACCAATAAAGCAGCCTTCCAGTTACAAGCT
>TU948919
tagattgctgattttttatatatttttattattatccattttagaataaggctgtaacgtaacaaaatgtggaaaaagtcaaggggtctgaatactttccgaaagcccTGTATATACATATTACAAAATAACACTGTTTGTTTGTCACATTTGATTGATGTGTAACACGTTCAGTCTAAAACTGGTTGGTAATTCAGcaccctactgtatgtgttgggaAATAGCGGATACATTGTCACTGGAGCTGCTGCCATGATATTACCATGATGATGAGAGGTTTATGCTACCAGCACATTTCCCACTGTTTTCTGCAAACTTGTCAAACTTTTTTCAACTGCAAtcaataaacaaacacacacatacacattcacacagacacacagcaattCAACCTGACTAATCAGTCATTTGTCCAAATTAGATAGTCCGTTGGGTGTGACTGCCTCTTCCAGTGAAGATGGCGTCTATCCCAACCAAGACCTAGTATCTACTCATACATCCACAAGGCCTAAAAGACCTAGTATCTATAGATACATCCAAGGCCTAAAATACCTAGTATCTACCCATGCATCCACAAGCCTAAAAGACCTAGTATCTACCCATACATCCACAAGCCATATTAGGCTTATCTATATACTGTAACCACCCTACACACACTAGGATCTAGTACATCTATCCACATACACAAGATCTGGTCCAAtgaatatatctctctctctacccataaaTACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAATATATCTCTATTTCTACCCATAAATACAGCCACATGGTCTGGTCCAATCAATATATCTCTTTCTACCCATAAATACAGCCACACGGTCTGGTCCAAtcaatatatctctctctctacccataaaTACAGCCACATGGTCTGGTCCAATCAATCTATTTCTCTCTACCCATAAATACAGCCACATGGTCTGGTCCAATCAATCTATTTCTCTCTACCCATAAATACAGCCTGGTAGGCCTAACTACCCATCTCCATCCATACAGCCACACCATATCAATGCAATTACAGTTCAGCACTTCAATGTCTGATACTTTGTGCTTCAAACATCTCTCACTTTAACTTTGAATGGTTTGTTTCTAATCTAGTGTTATAACTCCACTCATTGGCATGTGCCCTTTTCAGCTTTTTCTGTGTTTTTTTGGAAGATGATGATACCACACTTAAATGTTCAAAACTGTGGAAGGAGGGAATGGGGTGGGGTGTGCGtaaggggtggggtggggtaaaTTGAAAAGAATGAAGGACAACGTCTATCAGGGACTCGAGGCTACCTAACAGCATCGTTTGTCCATACGATACGATGAGAGGGGTCAGAACTAATACTGCCGGGGATCAGATTATCTTAACAACTATTAACAAATAACTGCCCTCTTCTCTTCATCCTCTAGATAGACTTTTGATGTTACCTTACAAAACAGCAGTCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAACAATCCAACTCAAAACAGCAGTTTCTTGTGTTCATGTGTGTTACCTTGTGAAAAAGCAGCTTGCCTTCTATATCTCTGTTCTTTCCATCTGAAATTTATTTTTGTATCAATATTAAATTAATGACATAATGGGGACTCTTTTTTTTTAGCATGGATTTATTAtatacttttaaaaatgttttgctgaAAAATAGTTTTTGAAAGTGCTTTTCAAACTGTCGTTTATCATTTGAACGCTGTGATATTAAAGATACATGCAGTATGGTGTTAGTGATACACAACCATTTCGGCTCTTAGTAAGAACTCATGAAAGATTGTCTTCATTTGAACACAAACATTTGTATGACCAATAAAGCAGCCTTCCAGTTACAAGCT
>TU948920
tagattgctgattttttatatatttttattattatccattttagaataaggctgtaacgtaacaaaatgtggaaaaagtcaaggggtctgaatactttccgaaagcccTGTATATACATATTACAAAATAACACTGTTTGTTTGTCACATTTGATTGATGTGTAACACGTTCAGTCTAAAACTGGTTGGTAATTCAGcaccctactgtatgtgttgggaAATAGCGGATACATTGTCACTGGAGCTGCTGCCATGATATTACCATGATGATGAGAGGTTTATGCTACCAGCACATTTCCCACTGTTTTCTGCAAACTTGTCAAACTTTTTTCAACTGCAAtcaataaacaaacacacacatacacattcacacagacacacagcaattCAACCTGACTAATCAGTCATTTGTCCAAATTAGATAGTCCGTTGGGTGTGACTGCCTCTTCCAGTGAAGATGGCGTCTATCCCAACCAAGACCTAGTATCTACTCATACATCCACAAGGCCTAAAAGACCTAGTATCTATAGATACATCCAAGGCCTAAAATACCTAGTATCTACCCATGCATCCACAAGCCTAAAAGACATAGTATCTACCCATACATCCACAAGCCTAAAATACCTAGTATCTACCCATGCATCCACAAGCCTAAAAGACCTAGTATCTACCCATACATCCACAAGCCATATTAGGCTTATCTATATACTGTAACCACCCTACACACACTAGGATCTAGTACATCTATCCACATACACAAGATCTGGTCCAAtgaatatatctctctctctacccataaaTACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAATATATCTCTATTTCTACCCATAAATACAGCCACATGGTCTGGTCCAATCAATATATCTCTTTCTACCCATAAATACAGCCACACGGTCTGGTCCAAtcaatatatctctctctctacccataaaTACAGCCACATGGTCTGGTCCAATCAATCTATTTCTCTCTACCCATAAATACAGCCACATGGTCTGGTCCAATCAATCTATTTCTCTCTACCCATAAATACAGCCTGGTAGGCCTAACTACCCATCTCCATCCATACAGCCACACCATATCAATGCAATTACAGTTCAGCACTTCAATGTCTGATACTTTGTGCTTCAAACATCTCTCACTTTAACTTTGAATGGTTTGTTTCTAATCTAGTGTTATAACTCCACTCATTGGCATGTGCCCTTTTCAGCTTTTTCTGTGTTTTTTTGGAAGATGATGATACCACACTTAAATGTTCAAAACTGTGGAAGGAGGGAATGGGGTGGGGTGTGCGtaaggggtggggtggggtaaaTTGAAAAGAATGAAGGACAACGTCTATCAGGGACTCGAGGCTACCTAACAGCATCGTTTGTCCATACGATACGATGAGAGGGGTCAGAACTAATACTGCCGGGGATCAGATTATCTTAACAACTATTAACAAATAACTGCCCTCTTCTCTTCATCCTCTAGATAGACTTTTGATGTTACCTTACAAAACAGCAGTCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAACAATCCAACTCAAAACAGCAGTTTCTTGTGTTCATGTGTGTTACCTTGTGAAAAAGCAGCTTGCCTTCTATATCTCTGTTCTTTCCATCTGAAATTTATTTTTGTATCAATATTAAATTAATGACATAATGGGGACTCTTTTTTTTTAGCATGGATTTATTAtatacttttaaaaatgttttgctgaAAAATAGTTTTTGAAAGTGCTTTTCAAACTGTCGTTTATCATTTGAACGCTGTGATATTAAAGATACATGCAGTATGGTGTTAGTGATACACAACCATTTCGGCTCTTAGTAAGAACTCATGAAAGATTGTCTTCATTTGAACACAAACATTTGTATGACCAATAAAGCAGCCTTCCAGTTACAAGCT
>TU948921
tagattgctgattttttatatatttttattattatccattttagaataaggctgtaacgtaacaaaatgtggaaaaagtcaaggggtctgaatactttccgaaagcccTGTATATACATATTACAAAATAACACTGTTTGTTTGTCACATTTGATTGATGTGTAACACGTTCAGTCTAAAACTGGTTGGTAATTCAGcaccctactgtatgtgttgggaAATAGCGGATACATTGTCACTGGAGCTGCTGCCATGATATTACCATGATGATGAGAGGTTTATGCTACCAGCACATTTCCCACTGTTTTCTGCAAACTTGTCAAACTTTTTTCAACTGCAAtcaataaacaaacacacacatacacattcacacagacacacagcaattCAACCTGACTAATCAGTCATTTGTCCAAATTAGATAGTCCGTTGGGTGTGACTGCCTCTTCCAGTGAAGATGGCGTCTATCCCAACCAAGACCTAGTATCTACTCATACATCCACAAGGCCTAAAAGACCTAGTATCTATAGATACATCCAAGGCCTAAAATACCTAGTATCTACCCATGCATCCACAAGCCTAAAAGACCTAGTATCTACCCATACATCCACAAGCCATATTAGGCTTATCTATATACTGTAACCACCCTACACACACTAGGATCTAGTACATCTATCCACATACACAAGATCTGGTCCAAtgaatatatctctctctctacccataaaTACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAAtatatctctctttctacccATAAATACAGCCACATGGTCTGGTCCAATCAATATATCTCTTTCTACCCATAAATACAGCCACACGGTCTGGTCCAAtcaatatatctctctctctacccataaaTACAGCCACATGGTCTGGTCCAATCAATCTATTTCTCTCTACCCATAAATACAGCCACATGGTCTGGTCCAATCAATCTATTTCTCTCTACCCATAAATACAGCCTGGTAGGCCTAACTACCCATCTCCATCCATACAGCCACACCATATCAATGCAATTACAGTTCAGCACTTCAATGTCTGATACTTTGTGCTTCAAACATCTCTCACTTTAACTTTGAATGGTTTGTTTCTAATCTAGTGTTATAACTCCACTCATTGGCATGTGCCCTTTTCAGCTTTTTCTGTGTTTTTTTGGAAGATGATGATACCACACTTAAATGTTCAAAACTGTGGAAGGAGGGAATGGGGTGGGGTGTGCGtaaggggtggggtggggtaaaTTGAAAAGAATGAAGGACAACGTCTATCAGGGACTCGAGGCTACCTAACAGCATCGTTTGTCCATACGATACGATGAGAGGGGTCAGAACTAATACTGCCGGGGATCAGATTATCTTAACAACTATTAACAAATAACTGCCCTCTTCTCTTCATCCTCTAGATAGACTTTTGATGTTACCTTACAAAACAGCAGTCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATTCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAGCAATCCAACTCAAAACAACAATCCAACTCAAAACAGCAGTTTCTTGTGTTCATGTGTGTTACCTTGTGAAAAAGCAGCTTGCCTTCTATATCTCTGTTCTTTCCATCTGAAATTTATTTTTGTATCAATATTAAATTAATGACATAATGGGGACTCTTTTTTTTTAGCATGGATTTATTAtatacttttaaaaatgttttgctgaAAAATAGTTTTTGAAAGTGCTTTTCAAACTGTCGTTTATCATTTGAACGCTGTGATATTAAAGATACATGCAGTATGGTGTTAGTGATACACAACCATTTCGGCTCTTAGTAAGAACTCATGAAAGATTGTCTTCATTTGAACACAAACATTTGTATGACCAATAAAGCAGCCTTCCAGTTACAAGCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC108268585

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU948917 False 2146 lncRNA 0.38 3 67791089 67793357
TU948918 False 731 lncRNA 0.36 2 67791089 67791855
TU948919 False 2089 lncRNA 0.38 3 67791089 67793357
TU948920 False 2161 lncRNA 0.38 2 67791089 67793357
TU948921 True 2110 lncRNA 0.38 4 67791089 67793357

Neighbor

gene id symbol gene type direction distance location
LOC110532730 LOC106572695 coding downstream 157111 67628737 ~ 67633978 (-)
LOC118966100 NA coding downstream 177771 67611132 ~ 67613318 (-)
LOC110532728 LOC106572698 coding downstream 188079 67587799 ~ 67603010 (-)
LOC110532727 LOC106572699 coding downstream 230517 67543067 ~ 67560577 (-)
LOC110531246 LOC106572701 coding downstream 335428 67327762 ~ 67455661 (-)
LOC110532733 LOC106567001 coding upstream 1700 67795057 ~ 67904020 (-)
LOC110532734 LOC106572725 coding upstream 137463 67930820 ~ 68027791 (-)
LOC118966101 NA coding upstream 174456 67967813 ~ 67971445 (-)
LOC110531249 LOC106572727 coding upstream 235520 68028408 ~ 68079899 (-)
LOC110532737 LOC106572728 coding upstream 331131 68124488 ~ 68138733 (-)
G834388 NA non-coding downstream 35401 67754315 ~ 67755688 (-)
G834387 NA non-coding downstream 37190 67753535 ~ 67753899 (-)
G834386 NA non-coding downstream 37923 67752679 ~ 67753166 (-)
G834385 NA non-coding downstream 38772 67750972 ~ 67752317 (-)
G834381 NA non-coding downstream 48434 67742297 ~ 67742655 (-)
G834409 NA non-coding upstream 23382 67816739 ~ 67817613 (-)
G834515 NA non-coding upstream 267895 68061252 ~ 68061577 (-)
G834580 NA non-coding upstream 423688 68217045 ~ 68233316 (-)
LOC110531251 LOC105023852 non-coding upstream 453182 68246539 ~ 68252815 (-)
G833521 NA other downstream 605846 67179249 ~ 67185243 (-)
G833029 NA other downstream 1202409 66587412 ~ 66588680 (-)
G832991 myl6b other downstream 1279523 66506278 ~ 66515999 (-)
G834676 NA other upstream 582301 68375658 ~ 68376157 (-)
G835608 LOC106572767 other upstream 1186526 68979883 ~ 69058294 (-)
G835808 NA other upstream 1638210 69431567 ~ 69431900 (-)
LOC118966109 NA other upstream 2289449 70082681 ~ 70084697 (-)

Expression


Co-expression Network