XLOC_002730 (BX957322.2)


Basic Information

Item Value
gene id XLOC_002730
gene name BX957322.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21570196 ~ 21573457 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005071
acagaaattcaaactagtttataacacgtggagtaaatagtggcaaaatagtaaactattccttttaaatattttattctgagacttttatttatatgtgtcttgtcttttgtcatattgtccttctagcccagattgtgatggacctggaatgcgacaccagttactcttaagacaagaaccgaataaagcacagatgtggagggatttgcagccaaactaactggagggaaggaacctttagtgtgggtgaacatactacctggatgtccaacaaaggctgcacaagagctcatttgatagcacatattctgtcctgtctacatctcggatgacctggaagtgcttcgacatcagatcatcatcatgttgctgccctttttcactgtccctttccacatcatttggccttcatcatttcctgtcttgtagcagtattctcaccttttttaaaattgtaataatttttgatgcattaattgttgactggttttaatgatcaattgtttattagtgttctgttgctctgttatattgaattattgctactgttttagcatggtttacacaataaacctttattgtgaagttaaaagtttcagtttctttattttttttgtacgtcttgaacagttaaaaaaacacttgtgcaatttttgaacatttttacccattataaagtagcactattaaataaaataaaataacatttaataactgtaaaatactatacagtaacaatgaaagtaac
>TCONS_00005072
acgttctgagtacacagatataagccaaagtcattatcactatatatCACTATATTTGTtggggtcagggaatgatttgtgtacaaatgtattttaaccccatacagattggtatggttgtaccatagatttagattaattaatgttaagtctttttttactcttattatatttatctgtttttcagctacagtaattgatgttgaaaaactgatgctaccaatcactcctcacttgattattcaagcccagattgtgatggacctggaatgcgacaccagttactcttaagacaagaaccgaataaagcacagatgtggagggatttgcagccaaactaactggagggaaggaacctttagtgtgggtgaacatactacctggatgtccaacaaaggctgcacaagagctcatttgatagcacatattctgtcctgtctacatctcggatgacctggaagtgcttcgacatcagatcatcatcatgttgctgccctttttcactgtccctttccacatcatttggccttcatcatttcctgtcttgtagcagtattctcaccttttttaaaattgtaataatttttgatgcattaattgttgactggttttaatgatcaattgtttattagtgttctgttgctctgttatattgaattattgctactgttttagcatggtttacacaataaacctttattgtg
>TCONS_00005073
aatttgaaattcacctgtcgtctttcatccagcgaattcatcctcgcacaacactgagatgaaggcgaagtcaccatgaaaagttaaacgtttaaaggtaagctctgtaattgatgttgaaaaactgatgctaccaatcactcctcacttgattattcaagcccagattgtgatggacctggaatgcgacaccagttactcttaagacaagaaccgaataaagcacagatgtggagggatttgcagccaaactaactggagggaaggaacctttagtgtgggtgaacatactacctggatgtccaacaaaggctgcacaagagctcatttgatagcacatattctgtcctgtctacatctcggatgacctggaagtgcttcgacatcagatcatcatcatgttgctgccctttttcactgtccctttccacatcatttggccttcatcatttcctgtcttgtagcagtattctcaccttttttaaaattgtaataatttttgatgcattaattgttgactggttttaatgatcaattgtttattagtgttctgttgctctgttatattgaattattgctactgttttagcatggtttacacaataaacctttattgtg
>TCONS_00005074
gattcatagaaccgaacggacacgactcgacctgcaggcaacggctctcctaatttgaaattcacctgtcgtctttcatccagcgaattcatcctcgcacaacactgagatgaaggcgaagtcaccatgaaaagttaaacgtttaaaggtaagctctggtctttacatagtcattatgactaagctattattatggtaaaatttttcaactgtaagttagttatttaaactaaactcataatgaaatgagtcttaactgttttattaaatggagctgaaaattaaatgcagttgaattattttaagctaaagttaatattaacaaaatacatattaattgtctgtttctcaataatgttaatgagcttgatgtatagtgtgtcat

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0022616 DNA strand elongation biological_process
GO:0007049 cell cycle biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006271 DNA strand elongation involved in DNA replication biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0043596 nuclear replication fork cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005657 replication fork cellular_component
GO:0005658 alpha DNA polymerase cellular_component
GO:0030894 replisome cellular_component
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095302

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005071 False 751 lncRNA 0.33 3 21570196 21572296
TCONS_00005072 False 704 lncRNA 0.36 4 21570361 21572709
TCONS_00005073 False 618 processed_transcript 0.39 6 21570361 21573406
TCONS_00005074 True 385 lncRNA 0.33 2 21572758 21573457

Neighbor

gene id symbol gene type direction distance location
XLOC_002729 zgc:165539 coding downstream 25079 21541925 ~ 21545117 (-)
XLOC_002728 fgf18b coding downstream 86131 21471316 ~ 21484065 (-)
XLOC_002727 avd coding downstream 207876 21359062 ~ 21362320 (-)
XLOC_002726 pcdh1a coding downstream 516137 20920364 ~ 21054059 (-)
XLOC_002725 BX004800.2 coding downstream 661640 20908442 ~ 20908556 (-)
XLOC_002731 NA coding upstream 54350 21627807 ~ 21649728 (-)
XLOC_002732 NA coding upstream 72697 21646154 ~ 21843863 (-)
XLOC_002733 CR774179.5 coding upstream 287994 21861451 ~ 21907310 (-)
XLOC_002734 FO744833.2 coding upstream 339648 21913105 ~ 21955231 (-)
XLOC_002735 FO744833.1 coding upstream 365305 21938762 ~ 21941443 (-)
XLOC_002724 NA non-coding downstream 681436 20842918 ~ 20888760 (-)
XLOC_002720 NA non-coding downstream 951383 20616776 ~ 20618813 (-)
XLOC_002716 BX294119.1 non-coding downstream 1086266 20483814 ~ 20483930 (-)
XLOC_002714 NA non-coding downstream 1114189 20448639 ~ 20456007 (-)
XLOC_002744 BX005194.1 non-coding upstream 698332 22271789 ~ 22271903 (-)
XLOC_002745 NA non-coding upstream 907701 22481158 ~ 22491458 (-)
XLOC_002748 NA non-coding upstream 957328 22530785 ~ 22534924 (-)

Expression


Co-expression Network