XLOC_002731


Basic Information

Item Value
gene id XLOC_002731
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21627807 ~ 21649728 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006035
gcaccatggacagcgcGATCTATTGCCGCTGTACAAAGCGCCTGGAATGGAAAGTGCAAGAGCAGACAAAGGCCATGCATAACAGAAGTCTGGAAAACTTGCGGTCGACAGCTGAAGATAAACTATGTACTTAAAATTTCAACAAACATTGCTCTGCAGCCCAGAGCTGTGAGTATATAGTACAATGCATTACGTTAAAGGGAAATTTCATTTCCTATACACACACTTCCCAGTGATGGCCTTTGGCCTTCAGCACCGATCTGTGTGTTTATCATCATGCAGACCACAATTAGACCAAACGTAAAGGACAGACCTGTGAATTGTGCCACACACTCCTATAAATCCATTATGGATGTACAGACATGAGGAGCAGAAAGGAAGTGGGTATAGCAGGGCATCTGCAATGCAGCACAGGGTGTGACCAGCCGCTACTGCTGCCATAACTCTcatcctgtatgtgtgtgtgtgtgtgtgtttgcatgatgGATCTTTCTAATTCCCTTACAGCTGAAATGCAGCCTGTGCCTTGTGGCTGAGCAAATCAGTAACTTTCTAGCCTAAGGAGAGGGTTGGAGTTTGAGGAGTGTGAATGTAAAGACACTGATGATGAAGTTTGGATACTGGAGGTGTTTGGAataaatttaaatgaactgttcTTTAATCAAACGCTCATTTTACCATTTAAACATAGCACTCTAAGTGACTATTCTGAGTGAATGTCTATCTAATTTGTCCCTTGTCTCTAATGTCCCCTGAGTCCCTTTTTGCACCAGCCTTctgtcacagacacacacagtaaACCATCCCCAGAGACAAGCCCACAGGGCAGCATAGCATTATCACATAAAACAGACACCCATGCACCCTTTggcaactgtatatgtgtgtgtgctggaaaaGATGCTGTTGTCTCCAGATGCAagttgtttccatccaaatattttacgtatattttaaattattgcaTAATTAGTTAAAAGACCACATCAAttataaaaatatgcataataaatatgcAGCCAATTGAGTAGGATATCATAATCTGATAAAAATTTGTATAAACTACAACAGAAACGCATTTACTGAATGAATTCCTTGATGCGCACAGTCATGTGATTTTGCCTCAACAGATAATGTGATTGGATTAGTAGACTAACCAGTGACCTGCACTCATCTCACGCCCATCACAAAAGCTGATTTAATAATTCCGCAAACACCTGAGCAAGTTCatcatcaaaatatatttttaatagtttcattttaagatttaattGCTTCATAAGATGTTTCTTGTTTGATGTGTCTAATttcttaaagggatggtttaGGCAAAAcagaaaattctctcatcatttactcacccttcacttgtaaCATACCTGTTTAATTTGCTTTTTTGTTAtgaaaattttttgtttttgttttcttttttgacacaaaataagttattttgaaaaatattgtaACCATTAACTTGCATATTACTTGTTTTTTCAACTATGtttgtcaatagttacaggttttcaaaataccttcttttgtattGAACATGAAAAGTGAACtcaaagtttggaaccacttgagggtgaacaAATGCtcagtagattttttttgttttgtttttgttttgggtgaactatctctttaaagcaACTAATTGCAAAAAGAATGTTCTTGAAAATGAGAAAAGCTTAAAACAACTGCTGAATTCCAGAGAATAAAGAGTAAACATTACATTAGGaaataattaattctattttGCTGGACGGAAATTCTTTACTGAAGTGTATTTAAGCTGTGTGTTTTCAATAAAGATTTAGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006035 True 1822 lncRNA 0.37 2 21627807 21649728

Neighbor

gene id symbol gene type direction distance location
XLOC_002730 BX957322.2 coding downstream 54350 21570196 ~ 21573457 (-)
XLOC_002729 zgc:165539 coding downstream 82690 21541925 ~ 21545117 (-)
XLOC_002728 fgf18b coding downstream 143742 21471316 ~ 21484065 (-)
XLOC_002727 avd coding downstream 265487 21359062 ~ 21362320 (-)
XLOC_002726 pcdh1a coding downstream 573748 20920364 ~ 21054059 (-)
XLOC_002733 CR774179.5 coding upstream 211723 21861451 ~ 21907310 (-)
XLOC_002734 FO744833.2 coding upstream 263377 21913105 ~ 21955231 (-)
XLOC_002735 FO744833.1 coding upstream 289034 21938762 ~ 21941443 (-)
XLOC_002736 tlx3b coding upstream 401326 22051054 ~ 22057001 (-)
XLOC_002737 ugt5g2 coding upstream 432868 22082596 ~ 22086626 (-)
XLOC_002725 BX004800.2 non-coding downstream 719251 20908442 ~ 20908556 (-)
XLOC_002724 NA non-coding downstream 739047 20842918 ~ 20888760 (-)
XLOC_002720 NA non-coding downstream 1008994 20616776 ~ 20618813 (-)
XLOC_002716 BX294119.1 non-coding downstream 1143877 20483814 ~ 20483930 (-)
XLOC_002744 BX005194.1 non-coding upstream 622061 22271789 ~ 22271903 (-)
XLOC_002745 NA non-coding upstream 831430 22481158 ~ 22491458 (-)
XLOC_002748 NA non-coding upstream 881057 22530785 ~ 22534924 (-)
XLOC_002749 NA non-coding upstream 904621 22554349 ~ 22567208 (-)
XLOC_002750 NA non-coding upstream 954545 22604273 ~ 22607715 (-)

Expression


Co-expression Network