G837727


Basic Information

Item Value
gene id G837727
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71554336 ~ 71558823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU952975
gtgttgtagtaccacctgctaacagtaactgtgttgtattaccaccTGTTAACAGTaagtaactgtgttgtagtaccacctgctaacagtaactgtgttgtattaccacctgctaacagtaactgtgttgtagtaccacctgctaacagtaactgtgttgtagtaccatctgctaacagtaactgtgttgtagtaccacctgctaacagtaactgtgttgtattaccaccTGTTAACAGTaagtaactgtgttgtagtaccacctgctaacagtaactgtgttgtattaccacctgctaacagtaactgtgttgtagtaccaCCTGCTAACAGTAACTGTGCTGTAGCACCACCTGCTAaaagtaactgtgttgtagtaccaCCTGCTAACAGTAACTGTGTTGTAGCACCACCTGCTGACAGTAACTGTGTTGTAGGACCACCTGCTAACAGTaagtaactgtgttgtagtaccaCCTGCTAACAGTAACTGTGTTGTAGCACCACCTGCTAAAAGTAACTGTGTTGAAGTACCACCTGCTAacagtaactgtgttgtagtaccaCCTGCTAACAGTAAGTAACTGTTGTAGTACCACCTGTTAATAGTaagtaactgtgttgtagtaccacctgctaacagtaactgtgttgtagtaccaCctgctaacagtatgtaactgtgttgtagtaccaTCTGCTAACAATAACTGTGTTGTAGTACTCTGTGGCTGAAAGGACATCCTATTATGTAATACTTAAGGTGCACATTATTTagcctggcacaatggaaccaatgtAATAGTCCCCAAAGTTcaaaccccacccatctgacACTCCAGACAGGCTCCATCAAACTGTCCTCCAGTTGTAGCAGTATATTGTACTTGGAGATGACCACCACGGTAATATCACTCACTAGTGTCTGACAGTGTTTCCAGTTAAGTTTTAGATCAAACCAGATGTGACAACGGATTGCCCCAAGGCTGAGATGGTAAGTTCCGGATATAGATACATCGCATATCAATAAGGCAGATGGACGGTGGCTGGCAACAAAATGGCTCTTGGTGAAGACCCCAGACCATCACCTGCCGTTGTTCTCTTGTGCAAGGCCCTGCACTGTGACTGAACTTGTGCCTTGCTTACGTGTCTGTCTGGGAGGGATCTGAATGTCAGAAGATTAATTTCTGTTTCTCACAAAATGGATAACAAAATATCTATTCTGTTCTAGTGGATTtctctgttccctatagagtATCGTCACTTCTAGAGGATATACTGAACTCTGGAACATCCAAGACACTGTCAGACACCTCAGAATGTAAGTACTATccattcatacaatatgttactcTCTATATAATGGCATCTATACTATTACAAACTCAGTGCTGTTGAAATGAACAATCCACATTCTGTTCACCTCTTTACTTCTCATAACATTTTCCAAATATATTTTCCGTGTTTGTATTTTGAAGCGATTTAATTTGCTTACGAGATGATTTGTTTAAATTTGACT

Function

NR:

description
proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU952975 True 1519 lncRNA 0.41 3 71554336 71558823

Neighbor

gene id symbol gene type direction distance location
prok1 prok1 coding downstream 113818 71432065 ~ 71440518 (-)
LOC100301637 LOC100301637 coding downstream 127717 71423205 ~ 71426619 (-)
dclre1b dclre1b coding downstream 378681 71158941 ~ 71175655 (-)
LOC110531262 LOC105023799 coding downstream 462419 70881668 ~ 71091917 (-)
rbm15 rbm15 coding upstream 4453 71563276 ~ 71568790 (-)
LOC110517102 LOC106572846 coding upstream 24671 71583494 ~ 71593154 (-)
LOC110532802 kcnc4 coding upstream 275381 71834204 ~ 71899748 (-)
LOC110532805 LOC106566386 coding upstream 342758 71901581 ~ 71905774 (-)
LOC110532803 LOC106572868 coding upstream 348168 71906991 ~ 71955546 (-)
G837726 NA non-coding downstream 164 71553825 ~ 71554172 (-)
G837764 NA non-coding downstream 8587 71545421 ~ 71545749 (-)
G837758 NA non-coding downstream 18689 71535425 ~ 71535647 (-)
G837743 NA non-coding downstream 48576 71505478 ~ 71505760 (-)
G837742 NA non-coding downstream 48984 71505027 ~ 71505352 (-)
G837771 NA non-coding upstream 15366 71574189 ~ 71574491 (-)
G837781 NA non-coding upstream 29421 71588244 ~ 71588472 (-)
G837757 NA non-coding upstream 65101 71623924 ~ 71629614 (-)
G837804 NA non-coding upstream 83666 71642489 ~ 71643342 (-)
G837809 NA non-coding upstream 91685 71650508 ~ 71650707 (-)
LOC110531265 plagl2 other downstream 1125378 70427951 ~ 70479312 (-)
G836619 NA other downstream 1344711 70208678 ~ 70209625 (-)
LOC118966109 NA other downstream 1469639 70082681 ~ 70084697 (-)
G835808 NA other downstream 2122436 69431567 ~ 69431900 (-)
G835608 LOC106572767 other downstream 2496042 68979883 ~ 69058294 (-)
G837952 NA other upstream 262774 71821597 ~ 71822337 (-)
G838098 NA other upstream 376055 71934878 ~ 71936573 (-)
G838204 NA other upstream 559838 72118661 ~ 72119287 (-)
G839372 NA other upstream 1468152 73026975 ~ 73028966 (-)
G839553 NA other upstream 1902532 73461355 ~ 73463040 (-)

Expression


Co-expression Network