XLOC_002733 (CR774179.5)


Basic Information

Item Value
gene id XLOC_002733
gene name CR774179.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21861451 ~ 21907310 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005076
TTGGCCCAACTCAAACTGTATGTTTTAAAGAAGCTCAGCCTCTCAAcaactgaagcagagcttgaagCCATTGTAGCTCCTTATAAATCttcacaatattatatttatacacatacattagattaTAAGGATGTAAAAGTTGAGATAAGAATGAAGttgaagatgacacttaaagAAAATGGGAAAATATCAGACCAAGTTCAAGAAATAAAGAAACTCAATTCATatacaaatgaagaaataaaaaaATGTACTGCAGATACGAATAAAAAAAGGAgtacaaacaaaaaatatagaaaaataGTATTTTCTTCTGCAGCTGGAATTAGgggtaaaaATGGGCCATACATTGCTGAATttacattatatatttctaatatattcatgtatttgatCTCTCACCTCAGTCCAGATGTTGGGCTGTTAATCATTACTCTCTgtattgacagattttttttcagccaaTTAAACTGCATTACACAATTCAAACAGCAGATGAGCGCAAGATTATTCAAGGAC
>TCONS_00005077
CATGCTCCAGTCCAGATTCTGCACTCTGAAGTCCGGGTTGTATTTACCCAATATGCAGGTTCATTTTACACCTTTATGGAGGAGGTCTGAAAAAAAGCAGATTGGCTGGAATGCTCATAAACATAAATGCAAGCCCCACCCGACCATCTGCCACAGGCCCGACATTTCCTGCACTCCAGCTGCCAGCCCCGAGTTTATTCTCTTCCTGGCTTTCTGCAGCTAACAGGATGAAAGGATCCCATTCATCCTTCGCCCCCTCTTTCCCCCCTTTCTTTATTTCATCTCCCGGAAAACATGCAAGTTAGAGGCAAAAGACAATGCCGCATAAACACGCGTGCTGTTTTCGCGCCAAGTATCCCGCGCGCAAAaatgtattgtttgggttttaaagattaaatggGCAACTATGACTCAGGGAAAATAGGGTTCACATAAACAGAAGTTCACACGAGAGAATAAAATGACAAACATATATAAAACTAACTGTTTTATACTATGTACTATAAGACTTATAgacttttttaaacaaagttagTGTGGAGGTAATACAAGATGGACCGTGTTTTCTTCACATTATGTTGAAATTCTAGGTCAGTCCCACCCCCCTCACTGTTGGCATTCAGAGTGAGTCCATTCGCAAGACCTTTTAAGGAAAGAAAAGATTCAGAAGGAAGAGAAAGTCGAGGACAGACAGAACTAATAATATTACACGTTAAC
>TCONS_00005078
TTTAGAAAGTAGCTCTGAACATCATGTCATTTACTGAAGTATAGATTAAGTATATAAGTACCTGTTCCCGTGCAACACAGAATATGCGATGGTACATTCCACACATAACCAGCAGAGGGAGGTAGAAGATTCCAAACGCTTTCAGCAGCACATAATTATTATTCCACTCGTAGCGGCAGGTCCTGCCTTCCTCTCCCTCATCCCACATGCTCCAGTCCAGATTCTGCACTCTGAAGTCCGGGTTGTATTTACCCAATATGCAGGTTCATTTTACACCTTTATGGAGGAGGTCTGAAAAAAAGCAGATTGGCTGGAATGCTCATAAACATAAATGCAAAGCAACTGGCCTGTAGGAGTGCATTACAATGGCTAAAGGTATTGAACTtggtctctctctgtctctgggAAGAGGGCTGGCTGTGAGGTCCACTTGCTCTTTGGCTTAGAGAGAGAAGCTGTAGAGAGATGCTGACATTTGGGACTCCTTTCACATTATACACACTACAGAGACTTTTTTCCCTTCATTTTCTTAGATACTATGTTAAGGCAGAATGTAGTCAAAAATAGTGCATAGCCCCTGGCAACAGCTTATTAATCAAAGGAAGCTAGCAGGGCATGGATATAGTACTGGATTGGAGTGTGATTCTGCATATAAAGCCATGAGTGTGTCGGGCAGCCAAACatttctttaattcatcataGGTTCTTCATGCTTCGTCACGCTCTTCTTACATGTCGTTGTTCGACTCTTAAGAAAGCCTGTTAGACCACAGATTGTTTAGGGCTTTGGAGACTTGAAGCATGCACTCACTTCCCAATGGAAAAGCCTCAACGCAGAGCTGATTACTGTCAGACCAACTGCCTGCCTCTCCTCATTGTGATACTGAAAGAAATactgaagaaagctaaaaaataaataaccattgacttccatagtaggaaaaaatagtatggaagtcaatggttaaagttTTCCATCTAATAGTGAGTATATTTCAATTGTGGGTaaactattcttttaaatgtgatgTAATTTACAGCAATTGCCATTTATTCTGGAAGTCAGATTAAAGCAATACAGTAATGTTTTCAAGCCAGGGTCATTTGCGATATGTGCTCAGGACTACATGTTTGAGAGTCAAGAAATACATACCCAGTGCTCCTGTATGTGTGCTCGCTGTGTTTGTAAATTCCatttcttgtaaatccaccagaggctgctgtgtacatttCTGCTGATCTCAACATTCTTCTCATGCGGGTCCGTGAGAGTAGCTGGTCAGCCTGTTGTCATGCATAATATATCAGCTTGCTATTGACTGACttacccaccaccttccctaaacccaaccgatagtgtttttaaaagcaaagtaAAAGAGAAAAGTCATCATGGCAGCAAGATTTCACACTGCTTTTTCATTTTAGGAGGCTTTTTTGTTTACTGCTTTTTCTGTTGTTTCGTTTTACCTGGTTACaagaaccgttcttcactggactcaaaccccaaTCCGCTAGGCTCAGCCTCTCAAGTCCCTTTGCATTCGTTTTACATACAAAATGCAgcctatagcccctttcacacagtgataccggtaaatattcagaaaatttccagaacaactttaccggtaagTTTTGAAAAACGCTGTTCAGACAGGCACAGACGTTCCAGAACTTTTCCGGAAGAGACCATTTTCACATCCTTTctaaaatactggtaaattctgacatcattaagcaGAAATAagctctaaacagctgcgcttgtatttgtaaacatagaagtggTACTTACtgttcatgcagctgcttttgtctcagagacatccaaaggcagaagcgcgaactgcagctaaatgtttacacagttgactacattacaaattctgtggatgtataagtattgtgaacaacttcaataAAAACATTTGGAGGAACGCTTTCACATGTCGAAAtgtacataatatatgtgtgtgctggtgctcaccgtagcaactgaagcagagcttgaaggtaaacaaacatcggtttatcataagcattttatcgataattttttACAAAGTTGGCATTAAGAATGAACATAGAAACTTCCTTTGACTAATTTCTAttagctaaatgtgtctggaaaaatattcaaaggcttttattgtcATAAACAG
>TCONS_00006038
GGCAGGTCCTGCCTTCCTCTCCCTCATCCCACATGCTCCAGTCCAGATTCTGCACTCTGAAGTCCGGGTTGTATTTACCCAATATGCAGGTTCATTTTACACCTTTATGGAGGAGGTCTGAAAAAAAGCAGATTGGCTGGAATGCTCATAAACATAAATGCAAAGTCACCTAGCAACTCCAGACCTCCATGACCCCTTGTACTGCTCAAAGAGTGGACTGAAAAGATGAACAGCTGAATCGAGATGATATTAAGACTTAGCAAACAGTGAGACGCGCTGGTTGACTCAATAGCAAGTCTCTCCTGGCTGTTGTTTGTTTTTCCGCCTATACAGAATATTCcgagtaaataaattaaaggcTTTTAACGAAGGTGAGAGAGTTTATTCCTGGCTAATGTACCTGAAGACTCTTTTTTTTGAATGTGATAGAAGCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105148 ENSDARG00000112040

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005076 False 519 mRNA 0.31 29 21861451 21890216
TCONS_00005077 False 717 processed_transcript 0.42 3 21863066 21907105
TCONS_00005078 False 2165 lncRNA 0.40 3 21886484 21907310
TCONS_00006038 True 434 lncRNA 0.43 3 21895919 21907136

Neighbor

gene id symbol gene type direction distance location
XLOC_002732 NA coding downstream 17588 21646154 ~ 21843863 (-)
XLOC_002731 NA coding downstream 211723 21627807 ~ 21649728 (-)
XLOC_002730 BX957322.2 coding downstream 287994 21570196 ~ 21573457 (-)
XLOC_002729 zgc:165539 coding downstream 316334 21541925 ~ 21545117 (-)
XLOC_002728 fgf18b coding downstream 377386 21471316 ~ 21484065 (-)
XLOC_002734 FO744833.2 coding upstream 5795 21913105 ~ 21955231 (-)
XLOC_002735 FO744833.1 coding upstream 31452 21938762 ~ 21941443 (-)
XLOC_002736 tlx3b coding upstream 143744 22051054 ~ 22057001 (-)
XLOC_002737 ugt5g2 coding upstream 175286 22082596 ~ 22086626 (-)
XLOC_002738 ponzr10 coding upstream 181155 22088465 ~ 22095505 (-)
XLOC_002725 BX004800.2 non-coding downstream 952895 20908442 ~ 20908556 (-)
XLOC_002724 NA non-coding downstream 972691 20842918 ~ 20888760 (-)
XLOC_002744 BX005194.1 non-coding upstream 364479 22271789 ~ 22271903 (-)
XLOC_002745 NA non-coding upstream 573848 22481158 ~ 22491458 (-)
XLOC_002748 NA non-coding upstream 623475 22530785 ~ 22534924 (-)
XLOC_002749 NA non-coding upstream 647039 22554349 ~ 22567208 (-)
XLOC_002750 NA non-coding upstream 696963 22604273 ~ 22607715 (-)

Expression


Co-expression Network