XLOC_027331 (BX537168.1)


Basic Information

Item Value
gene id XLOC_027331
gene name BX537168.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 22547576 ~ 22563565 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053774
ATGCTTTCCCAGCCACAGAAAGGCCAACATTCGTCATGCAGGACTGGGCTTCTGGAACATCTGTCAGAAAGCAGGTTTTGCTTCCTAGGTTTCAGACCCGGCCACAGCTACGCTAGATATGCTAAAGCTAGGTCCCCTGGCCTTTCGGGAAACAATGTGTTTCTATTCAGAGTCATCGGCGAACATGCAAGGCTATCAATCAGCAGATCTGGCGCTCAGAAGTGACTCGCTCATCAAAGGGCCTCATCAGAAGCGAAGACGTTTCTCAGAGGAAAACTAGAAAGGGCTGCGCTGGGTGACTGGAGGTGAAGCTGCTGCGTTTTCCTCCAGCATGCTGGGTGAAAAGACACTATGTGATGTGTTTCAGGCACGATATATACAGACAGTGATATTTGTAAGGCTATCCATTCTCAAAGGCTTTCCAAAGCAGTGTCTGTGACATAATTTTGTCAATAACAAATAATTTTCAATACAGAAATTCTGCTTACATGTCTgcaaaaaccaacacaatctcacggcaattcgtaactttttcatttagtggctaattcgtatgaattcgtacgatctaattcgtacaatttagtacgatttgcttatcccccaatgacggttggggttaggggtggggtcaggtgccacgcctccttttaaaaatcgtaccatttcgtacgactgaactcgtacgaattcgtacgaattagccactaaactggcaaaacgtaaaatacttacgttttctcgtgagatcaggctggcaaaaACCTGCTTATGTATACATTTTCCCAGTAGTTTACAGGGTttctctgaaaactgaactgacacagttttaatgtACTACAACacactgctttgacacaatctacactgtgaaagcgctatataaataatattaattgaaTATAATTTGCAGGTTAAATTAATACATGAGacagtaaaaacagcaacaactgtTTCCTACCTTTTTTACACAATCTATTATATGGGTTGATCAATGGTCATCTAGATGTGTTGGCTTTAGAACTCCTTGCTTGAATGTTTTGCTTTGAAACTGCAGTAAAACATGCCACAAGCAATGTGCAAGATTTCCaatagataaaatatttttttcatttatatagccTTTATGGTTGCGTCATCTACAATACACAGTGAAACATAGAGCATGTATTTCTAACTTTGCA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:1902494 catalytic complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117573

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053774 True 1184 lncRNA 0.40 3 22547576 22563565

Neighbor

gene id symbol gene type direction distance location
XLOC_027330 ndufb2 coding upstream 64445 22480169 ~ 22483131 (+)
XLOC_027329 NA coding upstream 120939 22424450 ~ 22426637 (+)
XLOC_027328 lhfpl3 coding upstream 127833 22365061 ~ 22419743 (+)
XLOC_027327 guca1a coding upstream 196600 22343093 ~ 22350976 (+)
XLOC_027326 NA coding upstream 204741 22338519 ~ 22342835 (+)
XLOC_027332 sema3c coding downstream 50060 22613625 ~ 22652944 (+)
XLOC_027333 gnai1 coding downstream 116877 22680442 ~ 22714063 (+)
XLOC_027334 slc35e3 coding downstream 553992 23117557 ~ 23122395 (+)
XLOC_027335 mdm2 coding downstream 562124 23125689 ~ 23136195 (+)
XLOC_027336 trhde.2 coding downstream 660316 23223881 ~ 23408029 (+)
XLOC_027324 NA non-coding upstream 433873 22022625 ~ 22113703 (+)
XLOC_027323 BX537308.1 non-coding upstream 580132 21966094 ~ 21967444 (+)
XLOC_027321 BX537308.2 non-coding upstream 705607 21841853 ~ 21841969 (+)
XLOC_027337 NA non-coding downstream 737324 23300889 ~ 23301228 (+)
XLOC_027338 AL935196.1 non-coding downstream 815697 23379262 ~ 23379378 (+)
XLOC_027339 NA non-coding downstream 868464 23432029 ~ 23505594 (+)
XLOC_027340 NA non-coding downstream 986309 23549874 ~ 23735971 (+)
XLOC_027341 NA non-coding downstream 1281019 23844584 ~ 23851648 (+)

Expression


Co-expression Network