G838155


Basic Information

Item Value
gene id G838155
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 72050406 ~ 72050974 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU953517
GAGTTTTGATGGCTTTATTTTCTTACAACATTGTTAAAACAATATGGCAAACCATGCTGCACAACAGAGGGACAAAAAGGCACATTTCAAAGACATGGCAGGAAGTACTGTAGGATTGCTGATGGCAGGAAGTACTGTAGGATTGCTGATGGCAGGAAGTACTGTAGGATTGCTGATGGCAGGAAGTACCGTAGGATTGCTTATGGCAGGgttccccaactggtgacCTGCGGGCCAGATTGATGTTATTTGGCCTGCAAAGCTTACTGAGCAATTGATCTaaattgttggacataagactaaGAAAAAAAACCCCACCAGCGAATCAGCACCAAGTGCTTTTAATTTGGAACATCTTTTCAAAGTAGTCCCACGCATCAGAGAGATATGTGATCGAATttcaaatgtaagcaaggtttgtaACGTTTCAGTCAAATACATCTGTTTGGATTTCTTGCAGTCtataaattatttgtaattaatgttct
>TU953518
GAGTTTTGATGGCTTTATTTTCTTACAACATTGTTAAAACAATATGGCAAACCATGCTGCACAACAGAGGGACAAAAAGGCACATTTCAAAGACATGGCAGGAAGTACTGTAGGATTGCTGATGGCAGGAAGTACTGTAGGATTGCTGATGGCAGGAAGTACTGTAGGATTGCTGATGGCAGGAAGTACTGTAGGATTGCTGATGGCAGGAAGTACTGTAGGATTGCTGatggcagggttccccaactggtgacCTGCGGGCCAGATTGATGTTATTTGGCCTGCAAAGCTTACTGAGCAATTGATCTaaattgttggacataagactaaGAAAAAAAACCCCACCAGCGAATCAGCACCAAGTGCTTTTAATTTGGAACATCTTTTCAAAGTAGTCCCACGCATCAGAGAGATATGTGATCGAATttcaaatgtaagcaaggtttgtaACGTTTCAGTCAAATACATCTGTTTGGATTTCTTGCAGTCtataaattatttgtaattaatgttct

Function

NR:

description
PREDICTED: splicing factor, arginine/serine-rich 15-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU953517 False 488 lncRNA 0.40 2 72050406 72050974
TU953518 True 515 lncRNA 0.41 2 72050406 72050974

Neighbor

gene id symbol gene type direction distance location
LOC110531272 LOC106572865 coding downstream 14593 71985134 ~ 72035813 (-)
LOC110531271 nfya coding downstream 70021 71960538 ~ 71980385 (-)
LOC110532803 LOC106572868 coding downstream 94860 71906991 ~ 71955546 (-)
LOC110532805 LOC106566386 coding downstream 144632 71901581 ~ 71905774 (-)
LOC110532802 kcnc4 coding downstream 150658 71834204 ~ 71899748 (-)
LOC110532812 LOC106572857 coding upstream 155472 72206446 ~ 72222104 (-)
LOC118966115 NA coding upstream 185154 72236128 ~ 72238619 (-)
eps8l3b LOC106572888 coding upstream 257807 72308781 ~ 72328432 (-)
LOC110532814 LOC106566373 coding upstream 277934 72328908 ~ 72333131 (-)
LOC118966116 NA coding upstream 331621 72382595 ~ 72384764 (-)
G838152 LOC106572864 non-coding downstream 4254 72043279 ~ 72046152 (-)
G838144 NA non-coding downstream 8174 72041725 ~ 72042232 (-)
G838139 NA non-coding downstream 12329 72037863 ~ 72038077 (-)
G838113 NA non-coding downstream 65326 71982635 ~ 71985080 (-)
G838158 NA non-coding upstream 1943 72052917 ~ 72053124 (-)
G838160 NA non-coding upstream 8798 72059772 ~ 72060027 (-)
G838189 NA non-coding upstream 56146 72107120 ~ 72107432 (-)
G838208 NA non-coding upstream 71276 72122250 ~ 72122918 (-)
G838217 NA non-coding upstream 75282 72126256 ~ 72126569 (-)
G838098 NA other downstream 113833 71934878 ~ 71936573 (-)
G837952 NA other downstream 228069 71821597 ~ 71822337 (-)
LOC110531265 plagl2 other downstream 1621448 70427951 ~ 70479312 (-)
G836619 NA other downstream 1840781 70208678 ~ 70209625 (-)
LOC118966109 NA other downstream 1965709 70082681 ~ 70084697 (-)
G838204 NA other upstream 67687 72118661 ~ 72119287 (-)
G839372 NA other upstream 976001 73026975 ~ 73028966 (-)
G839553 NA other upstream 1410381 73461355 ~ 73463040 (-)
rs21 LOC106572905 other upstream 1674278 73725252 ~ 73732414 (-)
G840404 NA other upstream 2651343 74702317 ~ 74703252 (-)

Expression


Co-expression Network