XLOC_027342


Basic Information

Item Value
gene id XLOC_027342
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 23880394 ~ 23888794 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057734
gcctacacCAATGTCTGTTGGtattagctgtttccatccaaatatgtgAATTGGACTTATGCGCaaaaacattgaataaaacatTTGCGAACAAAGCTCTGATTCCATCTAATGAGTCAAAAGAAAAAAgtggaatttgctgtggtatgAGAATCCACTATGGGCCTTgtattttacataataaattGCATGCGCCTCAAAAGACAAAGTCAAAATGCAATGGACGTGAAGTGGCTTTTAGAAGCGCAAGACCACTCTTTTGGAGTCCAGACAGTAAAAATACCAAACCACTTTGACGATGGACTTTGGCTGAACGAATTTATGACCAAATCAACATTTCAGATGTCTTCAGATTTATTTCTTattggataaaaagtttatcctgctcaTTTGTGAACATTTTAACTTTCATTTGCATCTTGGGATTTCCATTCAACATTTTTAATGTGAAATTTCAAAATGCGCATCGGATCAAAACATAGTGCAAACAGGGCTTGAAAAAAAGCTAAGCATTTACATTTTGTGGCAgcacgagggtgagtaaatgatgacagaatatttattGTTGGGTGCACTGTACCTTTCTTTAATGACTACGCAATCCTGGCTAAAACCCTGCACTGACTGGTGTTTTCAAAGCACTCTAAGACTTAATTATCACTTGAATGGCTTGATAATTGATTTGGGACTCTCTGGTATCTCTGTAGGGATGCAGTGGACACATGGACAGCACATAGTGGATTGGGAcacagacagaaggacagacgGGGGCCTCGCCCAGAGCAGCGGTACAGTACAGAACAGTGTGACTTGACAGTCAGCACCATCATTTTTACACTACAAACATGTAATACTTGACCCCAACATTGATCAATTACttgtttttgttgtaaaaatttaagtttaaacattacaaaccacaaggcTGGGGTGTTTTATAAATATAACACATATATATGGCTGTCCATCTACTGTTACAGCAAGTTGGGCTGCAcagaaatatacatatataaatctgTATGTATATTTTCCATGTTTGGTGACGAGACTGAAATTAATCGCAATGTAAATCAATGAAAAACAAACGGAACAGAAATAAAGGGATAAAGAAGAGAGACGTGAAACACCGGAGGGTTGCGTGAACATTTGTACAACATCGGACAGGTACTGGAACACCACGCCACAGAGAAAGAGACGAGTATTAGGAAAAATGGTTTAATATCGGAGACAGAGGCAAAAAACTGCATCACACAagaacatacatttacaaaaataagtcTGACTGTTCCAGCTACACAGTTAGGTTAACAGCAAAGACAGAGAAACCAGAAAAATCTAAACAGCTAAAAGCAAAGTCCTCAAATTACTTTTATCTTGTTTGTCAAACTAATACATTTATCCACTGAAGGTGACTAAATACTTCTAAGTCGTCTAATCGTCTTTATCATGGTGACTGCACAATACTTAACTAAATGAAACTTACCGCTGTTGTAAAGACTCTTTGTAAAGACAAAACCGTATTACGTATTTATAAGCCAAAAGGAAACTCCTCGACCCTCTTTCCGAAAAACGAACAAACGAACAGAAGAAAGCAAGGAAAGCAAATATTGATGTGAAGAAGAACAAAGAAGAGGAGGCTAAAGATACCAAGCCAAAGTTCTCCTAAAAAATCTTTATATCAAAACCTAACGTTCTGGACGCCAACTAGAAATCAAACTCGGGAACCAGTCGCTGACGGCCCCTGGCTGGGGCCGCGCAGCCTGtcagaaatagttttttttttttgttttttttttcctttaattgCCAGTATAAAAAGTTCCACTGGTACAAAAGGCATAAGTACAATCAGTGATAGAAATAGGAAAGCCtgctttttttgtactttttaaattcCCATCCAATGACAGATTTCCAAAGTGTTGTCAAACAAACATGTATCACGCTTACATAATCCACTGAAATGCATTGACTTTGGCTTTTCTCAAGACAAtacttaaaactatttaaatcttTTTAGAATCAAACAAAATGATATTAATCTACAGACGACAAGCTTTTGTTACGGCACGTTAGATAAAACACATACATTTCCAAAAAACTTGACATAAGCCAAAATGCAAAGAAACTACACATCTTTTTTTTGTCCTTTAAAATACACTTGTTAAATAGCActtaagagaaagaaagaaagtaagaaagaaacaaaagaaacaacaaaCAGATTTCAGATGCGTGTGGTGCGGAAAACCCCTGAGTGAAGAGTCTCAGCGAGAGCTCCTGCGACTTTGTGCTTTGCTAAACATCCAACGAATATATGTGTATGTCAAATTGTGAAAGCTTTACCCTGTTTGTCTTAAGTTGATTGTGATTAAATGTGCTGAGCGAAGCAGAATGTCAATATCTGAGAAGCCCCGAGCTGAGGTATAAGCCGAACCGCAGTGATATTGAGGATATGAGGTCAATCGAAgatgtttttgacatttttttttttttttttttgcttgattatAATTCCTCACTTTCTTTTGAACATTTTAGGATGGAAATACTACCTTACTGGGTAAGCGAAAAGATTCTTCAGTATTAATACTGTCCGGTGCTAGTGTGCTTTTATGTTTGTGCTAGTGGTCTTACAATTTGGCAAAAAAGAACAGCATATCTTAAACCGACTGACTTTAACTTCCCAATGCGAAATGCACTCATTAAGGggaaatttattttcattatttgggACTCATTCGTGAAACTCAATCAGAACAAATGTTTATATAAACCTTTCTTTAAACCATTCAtacatacaatgtaaaaaaacgtAACAGTTTAGTTTCACgacataatacaaataaaatatgttgtttatgTGCAATTTACTGAAGGTCTTTCTGCATATGTGTCATGATTTCATTAGAATTGTCATAGCTTGAAATTCAGAAAATTTACAAACACATAATACATCAACTTTTCTAATTGAGCGGgaaaaaaatacttcaaattGTTGTATATATTTTACGCAACACTCAAAAAATCAGTTTTTTGGTTCAAACTACTTaccacaattcttaagttttttggggggacaacttaattgttttatattcaatccacttaaatttgtaaaaattaagttGATTACATtaccttaatcgatttgtgttgggacaaaattaaggaactgggtagaacccagcatttcttacagtgaagatttATAAAATTGTGGTTTTATCAATGATTTATATAGAAATGTGTTCTGCGTTtaccattggaaaaaaaaatccagaatctTTTTGCGTATTTAGAATTATTCACACAAGACAAATTTGACGTAAAAATGTCCTGCTTGCTTTTTTCCAGACAGTTTACTCAAATTCATGTGCATGGCAATTTACATACGAATGGACACAGGTTGTAATTCACGCGatgataaacaaaatataaatgaattgttctgtttgtgttaaaaaaatgtacGTACGAACATAAAACAAATTTGCGCAAGGCTGGTTTTACAAACGATTTATACAGAAATACATTCTGTTTAAGGCCAATAATTTGAGGAGGAACACATTTATGAACATTTTATGTGCTCAAATTTTACTTTAACACAACGGTATGGTTTTCAAAAACAAATTCACATGTTTGGAAATTTCAGAAAGAAGGATGTTATAAATATTCTGATTGTGCTTAAAAATTTACATAGAACAACTGTATACAATTTATACAAGTCCGGTTTACATagaacttttttttacaaacaatttaAGGAAGAACATTTTTCTGCACAATATCTAGTAATAAATTCTGTCATCTAAGAATGATTTTACAGGAAATAATTGATTCATACGAAAATGTACTTTTTACTTGGCGAACAATATATGCAAATTTGTTCTAGTTTCACGAAGGAGTCCCTTACGTTTTTAACCGGCACACAGTTTGGCAGATTTAGATTTGGCTTAGGTTTTGAAACAAAAAGGACGACAAACAACCAATCACAACGAAGACACACACCTGtattcacacacatgcagacacccTTGGCACACATTTGAAATGTGCAGCAATGAATTCCAGCCCATTAATACTGATCAAAGTGTTAAGGCAACGGCAGAGCTTGGGTATAAAATAGTGCTATAGAGTGAAGTAAACTGGTCTGACGGGGGCTGCCTGTAAACTACGTTtgtaaacaatattatttttgttttatgggcCGTTTGAACGATGTGTAAACGTTTACAGCAAAGTGCTACAGGCGCTATTGCAAACCGTGGATCACACTGAACTACTTTGGCTTCAGGACGAGATTTGGTTGTCCTACGAACGTAAAATTGTCCTGATAAAGGCAGCAAAAAAAGCAAGACTACACGGAGACGTTTTTAACTGAACTGTAATGATTATTTGTGTAACGACGAGGCTGTCACGATGGTCAAAAATTACAATTCACAGAAATACGTCAATATTTTCTCCCATCACATGGTAATTTCTGTCAATTTTGGGCCCCCTGTGGTGTAATTGGATCtacgtgtatatgtgtgtgtgtgttcataaggAGAACTGCTGAGACTCAATCTCAGGGGCTCACATACACACACCGTCAAAGAAAAGAGGGTTGTGAGGTCAACCTTTAGCACaggtgtgtgtatgcgtgcataTGTGTGCTTAcctgtgaatgtatgtgtgtgtgtgtgtgcgtgtgtgcttgtgAGAGCGATTATGACACCAAGTAAAACACTGAAGCTGTAGGCAGGATGTACCGTCAGAATTTGGCACTAAATTCCActcatcttgttttttttctttataagaaaaaaaaatcacattttgctGAACAACATAACACATCTAAATATTGTTTCCcacaatagaaataaaataatagaatgaCATAGATGCTTCACAAGCCGACACTGTAACTTTTAAGGATTTTTATATAGCTAATTACCCAACAAGAAATTTAGCAAAGAGGGACTCCTatttaaaagaacaaacaaacaaataaacaaacaaacaaaaactaaacaaaaaacgagaataaaagtaaacaaacccaaaaaaacaaacaaaattagtaGTAATTGTACTTATGAAAGGCTTTGTCTATTGTTCAAGTAAATTGATTTTTAGTCTTCTCTTTAAAAACATGAGACAAATAAGACTGTTAGACTTGATGAAACCACGACTTTATCCACGAAAAGCACCGACGGGACCGCGGGTTACAcaaactctgttttttttttcctctatacatttaaacagtataaaatatagGTCATTTCATGTGCATTTAAACCACGGATTGTCTAACTGTAAGTCAGTTCAGCAAAAGGTGTGACACGTAGGTAGCATTTCCCCCCAAACAGGgcaatcttgtgtgtgtgtgtatgtgtgtgtgtgttttttaatacCTTTACTACTCTAGAAAAAAGTGGTTTTATATAGACTTTAATGAGAAATCAAGCCACTTAAAATGGCCTTATCAAAAAACTTTACACTGcctgaaaaatgtaaaaaccaCGAGCAAGCTCTGAGAGATTCTAATATCGATcagacagcttttttttttctttttttattaaaactgcgtGGAAGTAGTCTATTCGTTTAGAAACCGACGCCGGTTTCTTACGGCAGGCCTCAAATTAAGAGTGTTTGCCAACAGTAAGTCCCGACGCCAATCCCTGTATTGAACGTTCAAGTTTACgttaaatgaatgaaacaaaaaacaacataaagagagagagaaacaaaacaatcggacaaataaaaacaaacggAAAAATAATGAACGAAAATACTCGTAAATGTTTTGCCACaggaattttttttcttcttttttttctattttcttaaAATGATGCTCTggttatgttagtaaatatactCTGTCTCTAGAGTGTGAATGCAGCgttttcacattattattattgtattttttttttctttagtctttcctcccttccttccttccctccctccctcaccagttaaaacaaagcaaaaccaaAGAAAAACAGGAATAAAACAAAGCTCAAAATGAGGTCACAtgcgatttttttttctccaaaaaagATCAGGCTAAGATCAAAGTACAAAGATCAGTTAAAAGGAGACCAGATTATGAGCAGGAGAACTCAGAAAGACATCAGAAACAATGACGGGACGAtgagacgttttttttttgtacgcCACGTAGACATGCTAGGCAAACGATGAGCATAGAGTCATGGAGATGAGTTCTAGGGAAGAAAACGGGAGAGGAGAGTTACACACACAGCTCCGGCACACAACTAACATCATTAAACCATgagaacaacaaacaaacaaacatacaaacatacaaaacaaacaaacaacagcagCAGCGCTATTAACCAGCGTTTCACCAACATCACAttagcatttgatttttttttttcgaataatACACAGAATTCTAATAGATTGGCAACACGTAAATGAGGCACTCGCTCACACATTTACAAGAACAAACACACATTCCATCTCCTCAGTACAGACACACACCCAAAAGTATCCATCCCGGTCTGAACCCCAATCCGAGGCCGCAGATGGATCGCCGTTTGGGAGaaactgttcagttttttttttttttttggagtgaacGAACAAAAACCAAACAATACGCAATGAAAcgtaaaaaagagagagatttaCACTACGTATgacgaaagagagagagagagaagaggaaGAGACAGGTATGATGGGGACGTGACGGATGGGATTGTGGGAAATGGCAAGAGGGaaggcgagagagagagaaagaaagaaagaaaacgagGGGGTTTTGTACGTGTCACACAGCGGATGGTGTGGTTTAAGAAGACTACCGGACGAGGCTCAGGATAGAGCACGACTTTCCAAACCCAATAActtaaaagataataaataaagtcCTTTACTTCAGAGGCAGTAGAAATTTTGTATAAAAATAGAActgcatttttttacaaataaaatttacaggCCTGTGGCTTTctgtaatttaagttttttttttctttcgataAATATCAAGTTTTCAGTCCCCCATCCCTCCACATAGAACCTAGAATGCTTTATTCTTTTTAAACCATCGACAgatcaaaatgtttgtttttttaatgctctACACAAATTCTGTTGGACAAAGACCACAATTATCTGACGCATAAATTcggactattttttttttgttcttcaaaaacaaataaacaaacaaacaaacacaaacgaaAATAAACATACTGAcagaaaatgaattttaaaaaaaatctaaaaaacaaattaataaaatcacTGAACATTTGACGGCAAGTATTTGTTGAGGAAGCTGTTTAGGCAGTTGTTGCCGTTGACTACAGAGAGGCCACAGCGGGTTTAACCCTTTCCTCTCTAGTGCCAGTGGGCCAAGGGTTCGAAGGAGCAGCAAAGCCCTGAACCGACACCAGAGGCCAAAGGGCAAAGGTTAATGTGCATATTGGTGCTTTAATCATATCGGAACCTTCTCTACTTGTCCTTACAAGCCTCAGGTTCacaaagagaaacaaataatactttataCATCGTTACTTTCTGCTGTTGTTTTCATCATAGAATGAAATAGCCattgtataaatatttactttaaaaaaaaatgtttacacatGACTTAAACGGAATCAAAAAATTGACCAATAATAGCTGTTCATTCATCGCAAgtcatacaaataaaataataataaatggcgGAAAATGGAAGCGTTCatgtggaggagaaaaaaaaaagagaccaaataataataataatactgttattaATTGAAAAAGCTGAAAAGACGGTTTAGGGAGAGTGGCTCCCTCTGGTGGTCAAAGGGTGAAACTCCCCCCTCGTGCACCCCCTCCCCTTGGAGTCCCAGTTTGGTGACCGTGGCAGCAGTGGGGACTTACCCTAGCAGTGTAACATGAGAGAGGCCCTAGTGCTAAGATCAGTACGGTTTGCTGTCGTTCTTCGAGCGCTTAAGTTGGACTTTGAGACGCTTCATGCCGATCTGAAAGCCGTTCATCGCCTGAATGGCGGCCTGCGCAGACACTGGATTGTCATAACTGACGAAACCTGTGGTAGAGGAAAGACAAGACAGATTTTGATCATGTTTGAGAGCAAATTACAGATTCTTCTTATTTTAGAGCAACGGTGGTTTTAGCCCGATCTCACAAggaaatataactttttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057734 True 8210 lncRNA 0.36 2 23880394 23888794

Neighbor

gene id symbol gene type direction distance location
XLOC_027341 NA coding upstream 28746 23844584 ~ 23851648 (+)
XLOC_027340 NA coding upstream 144423 23549874 ~ 23735971 (+)
XLOC_027339 NA coding upstream 374800 23432029 ~ 23505594 (+)
XLOC_027336 trhde.2 coding upstream 472365 23223881 ~ 23408029 (+)
XLOC_027343 NA coding downstream 869554 24758348 ~ 24758781 (+)
XLOC_027344 NA coding downstream 1125255 25014049 ~ 25016268 (+)
XLOC_027345 NA coding downstream 1195301 25084095 ~ 25089847 (+)
XLOC_027346 kin coding downstream 1292778 25181572 ~ 25188160 (+)
XLOC_027347 itih5 coding downstream 1331880 25220674 ~ 25245817 (+)
XLOC_027338 AL935196.1 non-coding upstream 501016 23379262 ~ 23379378 (+)
XLOC_027337 NA non-coding upstream 579166 23300889 ~ 23301228 (+)
XLOC_027357 NA non-coding downstream 1865243 25754037 ~ 25755349 (+)
XLOC_027365 BX088697.1 non-coding downstream 2681904 26570698 ~ 26570813 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G295265 NA non-coding NC_048567.1 CM023221.2 73972087 ~ 73974981 (+)
striped catfish (Pangasianodon hypophthalmus) G282649 NA non-coding NC_047612.1 CM018558.1 14715045 ~ 14731004 (-)