G840216


Basic Information

Item Value
gene id G840216
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 74464023 ~ 74467257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU956115
agttgatatgttgataagttgatatgttgataagttgatatgttgataagttgatatgttgatatgttgataagttgatatgttgataagttgatatgttgatatgttgataagttgatatgcttcagtttgctgccatatgactggtttcacatgtGTCTCCAGCGATCATAAGGTCAAATAGATCTAAAACAATGTATTTATATTTCCAATCGCCTTTTCCAATCGGCTTACTCATTTACCTAGATTTTATCAATAGCCCTTATCAGTTTGTAAATTACAGTGCGTGGAGAATTGTTTTTCATAGGGGTGTACTATATATTGGTGAAAATATCGGAATCGAACAATATTAGCTAAGAATGCCgacatcggtatcggcccgatgtctagtttaacgccgatgtgcaaaagCGGTGTCAAAGcagacgtgcatacctatataacataggtagatgacctacatacctatataacgtaggtagatgacctacatacctgtataacgtaggtagatgacctacatacctatataacgtaggtagatgacctacatacctatataacgtaggtagatgacgtaatgagGCCACGTAAAATGTTGCACTACACgggcaacacagcattcctaacctagcccacaatgtctgctgtgcgGATTGAGCAGTCAACAAGACGAGCAGTCATTTTGAAAGAGTTGAAACGTTCAGCGAGAGAAATCAAAGGCGAAATCGATTAACACCAAGATAAggggaattcattgcccttgacaatcaatcgttctctgtcgtgggtgatgttggttTTCGTGACTGGCCGAGCACCGGCACACACTACCGAGTGCAccatttttcagatgttgccttactttagttacacagtaatagcgtcactgctattagcttcacgacacaCTGCGGAACGCCGTtcgggtctttgcgtgtcaaaaaagatccacgtcaaataacactagtTGACAATAACACTATTTGATGCGCTAAATACGCTTTTAATTTGACACATCAAATAACACAATTATTCAataatgttgtgtgttctgaatttgcacaTGCAAGCCAaacgccaccactactatcagtagcactgtcaaagctgtacaaaaatgtctgcaaacaagcaaccaccggccacgaacgatgtgtttacaataccgcgttggtaataaagcattatttgttcgTCCGCAACTTCTgggctagctagcattagcttggtacctagctagcaccaatgtaaccagcctgaaaacaatgaccagtagaaactgcagtcattttcattattcttagcaatgatttagggatccttgtgagtaagtattagctaggttgccacttgttggtCACCTGTTGAAATTGAACTTcggttcatgaaaataaatagctagccagctacataactctgttgcccaaagctaacgttgtAAGCAgacagctagcttcatctggctagtgaggcttgaccggactgggttatgtgttgtgaagctagccacaatagggttaggcacaatagtggaatttgcggtttgccttcaaaataaaagtacctctGAAAATgatgcaaataaaataaaataaaattgtattagtaacatgcgccgaatacaacaggtgtaggtagaccttacagtgaaatgcttgcttacgagcccttaatTAACTAAcaatgcatttttaaaaaatacagataagagtaagaaataaaagtaacaagtaattcaagagcagcagtaaaataacaatagctagactatatacaggggggtaccggtacagagtcagtgggggggcagggtagcctagtggttagagcgttggactagtaaccggaaggtagcaagttcaaacccctgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaagccgtcattgaaaataagaatttgttctttaactgacttgcctagttaaataaaggtaaaataaaaaatgtgagggggctaatatgtacatgtaggtagagttattaaagtgactagatgataacaacagagagtagcagcagtgtaaaagagtgGAAAGTTCAGGCATATAGTCTGCAAacagaaggttacaattggtatatttagactagatagtgttaaacaaggttggaatatTAAGCATTGAAATGTGGAGTCTACTCTTCCTCGGggatagtgttcaatacacattcACAGCtgtttcagagtcccgcaataagagctacgacactaaggttctctgggtgtcactgagtagactgatgtcattgatccacaatccataggtaatgctgtacagtgaaataagtatgtaTCCATTGTGATTTTAACAGATTTTTATTGTctttgttgattttatataacaaTATTCCAACTtcgtttagcatgatctattaaatgatggcataattctactacttgtattcatttgcatcactgtcaatgacatgcttttattttgaaggctaatcgcaaagtccactattgtggctaatccttattttggctagcttcacatagataggtccgaccaccattaatcaaataagacctctcttataaattagggttattttaggtgatgacacctagctatatagttagctagctaactatagctactgaaacagattatgtcgttttgctatgtttttggggaagcaCATTGTTTGcctccatgagctagctagctttcttttatgaccagcactgtaggtgctcGAGACAACTTTGCCAGCATCATAGCATAGGTAtcaatgaatcgttgtgacatatgaaatacaagtgatagtgtaatcaatgtgtcaACTGCTCCCTTCACacaacagtgcaaactggccctaaccagaatagaaagaggagtgggaggccccggtgcacaactgagcaagaggacaagtacatgaagggagtagtacacagcgttgtacgagatcttcagttttttggcaatttctcgcattgaatagccttaatttcttagaacaagaatagactgacgtgATTCAGAAGAAAATTCTTTGTTTCTAGACATTTTGAGACTGTAATCGAATcctcaaatgctgatgctccagatacttaactagtcaaaagaaggccagttgtattgcttctttaatcagcacataattaacataat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU956115 True 3175 lncRNA 0.39 2 74464023 74467257
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965945 NA coding downstream 96008 74367384 ~ 74368015 (-)
LOC110531289 LOC106572917 coding downstream 290196 74169354 ~ 74173827 (-)
LOC110531282 LOC106590852 coding downstream 407897 73894981 ~ 74056126 (-)
LOC110531283 cables2 coding downstream 630012 73769116 ~ 73834011 (-)
LOC118966191 NA coding downstream 717672 73737132 ~ 73746351 (-)
LOC110516643 LOC106572940 coding upstream 101084 74568341 ~ 74640509 (-)
LOC110503218 LOC106572941 coding upstream 322732 74789989 ~ 74792632 (-)
LOC110531288 LOC106572946 coding upstream 884007 75346239 ~ 75450987 (-)
LOC110531287 LOC106572946 coding upstream 1039950 75421476 ~ 75625131 (-)
LOC118966123 NA coding upstream 1192444 75659701 ~ 75661259 (-)
G840191 NA non-coding downstream 76135 74387177 ~ 74387888 (-)
G840181 NA non-coding downstream 88012 74375753 ~ 74376011 (-)
G840179 NA non-coding downstream 88693 74374857 ~ 74375330 (-)
G840107 NA non-coding downstream 95339 74368358 ~ 74368684 (-)
G840104 NA non-coding downstream 97344 74365104 ~ 74366679 (-)
G840232 NA non-coding upstream 39187 74506444 ~ 74506806 (-)
G840253 NA non-coding upstream 78064 74545321 ~ 74545894 (-)
G840255 NA non-coding upstream 81085 74548342 ~ 74548636 (-)
G840335 NA non-coding upstream 86498 74553755 ~ 74581968 (-)
G840339 NA non-coding upstream 90951 74558208 ~ 74559742 (-)
rs21 LOC106572905 other downstream 732393 73725252 ~ 73732414 (-)
G839553 NA other downstream 1000983 73461355 ~ 73463040 (-)
G839372 NA other downstream 1435057 73026975 ~ 73028966 (-)
G838204 NA other downstream 2344736 72118661 ~ 72119287 (-)
G838098 NA other downstream 2527450 71934878 ~ 71936573 (-)
G840404 NA other upstream 235060 74702317 ~ 74703252 (-)
G840763 NA other upstream 614314 75081571 ~ 75086417 (-)
G840780 tmem81 other upstream 640162 75107419 ~ 75108925 (-)
G840818 NA other upstream 665194 75132451 ~ 75133738 (-)
G840828 NA other upstream 717867 75185124 ~ 75186750 (-)

Expression

G840216 Expression in all Baseline Samples

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G840216 Expression in each Bioproject

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G840216 Expression in each Sample
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Co-expression Network