G842310


Basic Information

Item Value
gene id G842310
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 76719286 ~ 76720282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU958817
tGTGTATGTATAACGTTACTAGATCATAAATGAACGTTAAGCAGCCAATCTTCCATACACACATTGCTACCAGTCTGCGTGCGTGATACGTAGTCTACGAAATACAGTGATGACTGATaaacaaatgtttttaaaaaaacaaacagatggTCCAGAAGACAACCAAAGACAAGTAGTCGTGTTGATATCCCAGTTGCCCCCCCGTCATGTTGATATCCCAGTTGCCCCCCCGTCATGTTGATATCCCAGTTGCCCCGTCATGTTGATATCCCAGTTGCCCCGTCATGTTGAGAACTTTCATTTGTCTTAATGCCAACAGCATTAAGTGTCACATGCAGAAGTAAAAAACAGCACTGGTCTGCCTGATCTAATGGTAAACTACCAGTGATGTGTTGGAAGACATTTTTCAGTCATGTCCATAAGTAAAGTCAAAATTCTAGTCATAGAAATACAATGAATAGAATGATTTTCTAGCCATTCTATTTCTAAAAGCACCAAATTGAAATGTCAATGACACGCAGGCACTTCTGCGATGGTTGGAGGCGCACCAATTCACGTCCTGGTTTTCCAAAAACAAAGTCCTGTACGGTGAACCGAGCTGGTATGATGAGCAACCTGGCCTTGGGTCCCTGTATTTAGTTGGTTCCGTGAACTACACTTGCATAACAAGTAAACCTGCCTAGAGTTATGGCTTGGTGGGCTAACACAAGTTTAGGatttagctcagcaggctaacacagtcttgtccCGGGGGTTCAAACCCTCTCCAGTCACACCCTCCAACCCTGTTACACCCACCCATCCTCCCCCAACTCCAGCTCAAATTCCAGGTCCTCCTCCTCTATAAGTTCCAGGTCCTCCTCTATAAGTTCCAGGTCCTTCTCCACGATGTTGTCTCGACACctctcacacctctcctcctccagagGGACCAGCAGTTCACAGATGGCCGCCCTCACACAAAGAACCGGCTCC
>TU958818
tGTGTATGTATAACGTTACTAGATCATAAATGAACGTTAAGCAGCCAATCTTCCATACACACATTGCTACCAGTCTGCGTGCGTGATACGTAGTCTACGAAATACAGTGATGACTGATaaacaaatgtttttaaaaaaacaaacagatggTCCAGAAGACAACCAAAGACAAGTAGTCGTGTTGATATCCCAGTTGCCCCGTCATGTTGATATCCCAGTTGCCCCGTCATGTTGATATCCCAGTTGCCCCGTCACGTTGATATCCCAGTTGCCCCGTGTTGAGAACTTTCATTTGTCTTAATGCCAACAGCATTAAGTGTCACATGCAGAAGTAAAAAACAGCACTGGTCTGCCTGATCTAATGGTAAACTACCAGTGATGTGTTGGAAGACATTTTTCAGTCATGTCCATAAGTAAAGTCAAAATTCTAGTCATAGAAATACAATGAATAGAATGATTTTCTAGCCATTCTATTTCTAAAAGCACCAAATTGAAATGTCAATGACACGCAGGCACTTCTGCGATGGTTGGAGGCGCACCAATTCACGTCCTGGTTTTCCAAAAACAAAGTCCTGTACGGTGAACCGAGCTGGTATGATGAGCAACCTGGCCTTGGGTCCCTGTATTTAGTTGGTTCCGTGAACTACACTTGCATAACAAGTAAACCTGCCTAGAGTTATGGCTTGGTGGGCTAACACAAGTTTAGGatttagctcagcaggctaacacagtcttgtccCGGGGGTTCAAACCCTCTCCAGTCACACCCTCCAACCCTGTTACACCCACCCATCCTCCCCCAACTCCAGCTCAAATTCCAGGTCCTCCTCCTCTATAAGTTCCAGGTCCTTCTCCACGATGTTGTCTCGACACctctcacacctctcctcctccagagGGACCAGCAGTTCACAGATGGCCGCCCTCACACAAAGAACCGGCTCC

Function

NR:

description
uncharacterized protein LOC109908389

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU958817 False 975 lncRNA 0.46 2 76719286 76720282
TU958818 True 945 lncRNA 0.46 3 76719286 76720282

Neighbor

gene id symbol gene type direction distance location
zgc:113363 LOC106572953 coding downstream 50151 76656942 ~ 76669135 (-)
mecp2 LOC106572920 coding downstream 401702 76309986 ~ 76317584 (-)
hcfc1b LOC106572922 coding downstream 436109 76210034 ~ 76283177 (-)
cdk20 cdk20 coding downstream 521320 76179039 ~ 76197966 (-)
hdac6 hdac6 coding downstream 549915 76127987 ~ 76169371 (-)
LOC110531297 tkt coding upstream 490138 77210420 ~ 77227773 (-)
lrrc23 lrrc23 coding upstream 518548 77238830 ~ 77253709 (-)
LOC110532861 LOC105006798 coding upstream 547079 77267361 ~ 77355158 (-)
LOC110529252 LOC106592002 coding upstream 637746 77358028 ~ 77368083 (-)
LOC110531295 LOC106572974 coding upstream 734190 77454472 ~ 77544388 (-)
G842311 LOC106572956 non-coding downstream 1269 76717254 ~ 76718017 (-)
G842308 LOC106572956 non-coding downstream 3467 76715509 ~ 76715819 (-)
G842306 NA non-coding downstream 5341 76713733 ~ 76713945 (-)
G842302 LOC106572956 non-coding downstream 9966 76708902 ~ 76709320 (-)
G842303 NA non-coding downstream 13541 76701400 ~ 76705745 (-)
G842312 NA non-coding upstream 172 76720454 ~ 76720690 (-)
G842314 NA non-coding upstream 12075 76732357 ~ 76732620 (-)
G842317 NA non-coding upstream 22748 76743030 ~ 76743276 (-)
G842318 NA non-coding upstream 23541 76743823 ~ 76755142 (-)
G842319 NA non-coding upstream 25319 76745601 ~ 76753605 (-)
G842232 aprin other downstream 83650 76625619 ~ 76635636 (-)
G842035 LOC106572932 other downstream 689354 76023343 ~ 76029932 (-)
G841224 NA other downstream 1055006 75659713 ~ 75664280 (-)
LOC110531287 LOC106572946 other downstream 1213808 75421476 ~ 75625131 (-)
G842335 NA other upstream 136175 76856457 ~ 76859965 (-)
G842449 NA other upstream 322307 77042589 ~ 77043395 (-)
G842543 NA other upstream 644737 77365019 ~ 77365360 (-)
G842858 NA other upstream 1043819 77764101 ~ 77764737 (-)

Expression


Co-expression Network