G842449


Basic Information

Item Value
gene id G842449
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 77042589 ~ 77043395 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU958999
GTTTTTTATCTACTTGTTATGCAGTataacctcgtacccctgcacatctagtactggtactctgtgtatacagccatgttatcattgactcagtactggtactctgtgtatagtaccatgttatcattgactcagtactggtactctgtgtatatagccatgttatcattgactcagtactggtactctgtgtatatagccatgttatcattgactcagtactggtactctgtgtatacagccatgttatcattgactcagtactggtactctgtgtatacagccatgttatcatcgactcagtactggtactctgtgtatacagccatgttatcattgactcagtactggtactctgtgtatacagccatgttatcattgactcagtactggtactctgtgtatacagccatgttatcattgactcagtactggtactctgtgtatacagccatgttatcattgactcagtactggtactctgtgtatagtaccatgttatcattgactcagtactggtactctgtgtatagatccatgttatcattgactcagtactggtactctgtgtatagtaccatgttatcattgactcagtactggtactctgtgtatatagccatgttatcattgactcagtactggtactctgtgtatagtaccatgttatcattgactcagtactggtactctgtgtatatagccatgttatcattgactcagtactggtactctgtgtatatagccatgttatcattgactcagtactggtactctgtgtatagtaCCATGGTATCATATTTATTA

Function

NR:

description
PREDICTED: transcription factor 20 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU958999 True 807 TUCP 0.39 1 77042589 77043395

Neighbor

gene id symbol gene type direction distance location
zgc:113363 LOC106572953 coding downstream 373454 76656942 ~ 76669135 (-)
mecp2 LOC106572920 coding downstream 725005 76309986 ~ 76317584 (-)
hcfc1b LOC106572922 coding downstream 759412 76210034 ~ 76283177 (-)
cdk20 cdk20 coding downstream 844623 76179039 ~ 76197966 (-)
hdac6 hdac6 coding downstream 873218 76127987 ~ 76169371 (-)
LOC110531297 tkt coding upstream 167025 77210420 ~ 77227773 (-)
lrrc23 lrrc23 coding upstream 195435 77238830 ~ 77253709 (-)
LOC110532861 LOC105006798 coding upstream 223966 77267361 ~ 77355158 (-)
LOC110529252 LOC106592002 coding upstream 314633 77358028 ~ 77368083 (-)
LOC110531295 LOC106572974 coding upstream 411077 77454472 ~ 77544388 (-)
G842443 NA non-coding downstream 6116 77030722 ~ 77036473 (-)
G842442 LOC106572960 non-coding downstream 12563 77029345 ~ 77030026 (-)
G842441 NA non-coding downstream 19467 77022861 ~ 77023122 (-)
G842440 NA non-coding downstream 21415 77020794 ~ 77021174 (-)
G842438 NA non-coding downstream 25426 77016915 ~ 77017163 (-)
G842453 NA non-coding upstream 24071 77067466 ~ 77067993 (-)
G842454 NA non-coding upstream 29382 77072777 ~ 77087891 (-)
G842455 NA non-coding upstream 45306 77088701 ~ 77089536 (-)
G842456 NA non-coding upstream 47092 77090487 ~ 77090900 (-)
G842457 NA non-coding upstream 61433 77104828 ~ 77125696 (-)
G842335 NA other downstream 182624 76856457 ~ 76859965 (-)
G842232 aprin other downstream 406953 76625619 ~ 76635636 (-)
G842035 LOC106572932 other downstream 1012657 76023343 ~ 76029932 (-)
G841224 NA other downstream 1378309 75659713 ~ 75664280 (-)
G842543 NA other upstream 321624 77365019 ~ 77365360 (-)
G842858 NA other upstream 720706 77764101 ~ 77764737 (-)
G842859 NA other upstream 722916 77766311 ~ 77766840 (-)
G842978 NA other upstream 902753 77946148 ~ 77946428 (-)

Expression


Co-expression Network