G842788


Basic Information

Item Value
gene id G842788
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 77638787 ~ 77671981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU959473
TCAGAATCAACTCCTGTCTTCGCCTCAAGCTCATTAATGATAGAATGTTGATATTTGAAGATGGCAGAAAGGCCAGTCTCTTTGGCAGTGACGAGGAGTACAATAAGTGGATTAGCTGAAGacactggcacccaggctagaatgtctctgctgtaaccaagaagatTGATCTTGACCtatagctaacttagctagcaagttagcaaaccaaatgcatagctggagccctgagctggagaTCACTGACTTGACACATCTTAGATTTATTTTAGTTACGCTTAACCTGTTTCTTATAGTTATACTTAAcgtgtaagggataatcaacgagataataataataataataagcaaTCAATGAATATCCCTTTCATAACACGGCTATAACTTAACACATTTGCCGCTAGAAATGTGTTttaacatccactgaagtagctagcaagtttactagatagctacagtagttgccttggtcaccaaacaaacagacttgctagtttaaCTAACCAAACCATCTGTCCTAGCTTTCCATTATGACAATCGAATTCAACAATGCTAGTAATGTTTTCAATTCGACTTTTGCTTTTAAAAGCAGCTCAACTAttagaacatgtaagaatgaactgTAGCGTTTGAATTCTACCGTGCGTTATAGAGAAATAATGCACGTTCTAGAATGcacttcaagccaatcagaaaaggtgtattcaacaatgccatggtataaataGTTCTAGGCAGTTGCGTAGTACTCAGCCTCCCAGTGCCCCTAACCCACCCCAAAATAAATATTATATAAACGCTATTGAAAATAAGACAGTCTGCAGGCTTGTGTGGTATCCAGATTGTCGTACTTTTTATACCGACCTTGTGCCATACCGGAATATTCGGGAATGTCGGCACTGAACACAAGGGCTGCTATTTTCAAACCCCACCTCCTGTAAATCtaaaggttagcaatgctaacaggtacatgtaaaatcccatagaaaatagtaaataaatgCTAACGAGCGCATTGCGAACATTTTATGGTCTCTGACCTAAGCTATTGCAGGGCAGACATCCCAGCTCAGGGGATTCTCTGCTGCTACCAAGTGAagcttgattttggaagaagctaagcacttagctagatagctaacgagctaataaattagcaaaccaaTGCAAAACTCCAGAGCATTTTAGCACATTGTAGACAGTTAACTTTTAATAGTTAGAAGATATCTAGCTGGCCGACATTTAGTTGTGAATCCCCTACGGTAACTAGATCACCTGGTGTATAACAGTGAGTGACATGCAAGGCTCCGGTCTCTAGTCATTGTGTGCTTCTAAACCACGTGACTGGGGGACTACCGGTAAACTTCAAAATGGAGACGTTTTTTGTGACCGCTGAAATTAAGAATGCGATCTTCTTTATCTCCTAACGCATTACACAAGCtaactgcaggtatttacttaaaataGATTCAAATATTCAaaatcagataaaaaaaaattaaaatgtcaAATAGTTTCAACGGTATTGACAAACCATCCAACGGCCATTttcaaataccccggtatacagtatatacggtATACTACCCAAGCCTAAAGCCAAGGTCACTAAACTCCTCCTTGTGAAGGACAATAAAGTTGTTTTGTACTGAATCGTATTCCCTAAAGACCTGTTGCAGTTCCGCTGTCTGTGATTGTGTGTTAATTTATTCTTTAATTTTAATGGCTGATGTAATTTGAGTTCAGATGGCATTCCGAGCCGCTCAGGA
>TU959475
TGTTctgtggagagagaaaaaaagtgatAGTTCCAATATTTGGATAATTGTTGTGATTGGAGGATAGATTGGAGGGGTTATCGAATCAGAATCAACTCCTGTCTTCGCCTCAAGCTCATTAATGATAGAATGTTGATATTTGAAGATGGCAGAAAGGCCAGTCTCTTTGGCAGTGACGAGGAGTACAATAAGTGGATTAGCTGAAGacactggcacccaggctagaatgtctctgctgtaaccaagaagatTGATCTTGACCtatagctaacttagctagcaagttagcaaaccaaatgcatagctggagccctgagctggagaTCACTGACTTGACACATCTTAGATTTATTTTAGT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU959473 False 1769 lncRNA 0.39 2 77638787 77671896
TU959475 True 358 lncRNA 0.41 2 77640283 77671981

Neighbor

gene id symbol gene type direction distance location
LOC110531295 LOC106572974 coding downstream 94399 77454472 ~ 77544388 (-)
LOC110529252 LOC106592002 coding downstream 270704 77358028 ~ 77368083 (-)
LOC110532861 LOC105006798 coding downstream 283629 77267361 ~ 77355158 (-)
lrrc23 lrrc23 coding downstream 385078 77238830 ~ 77253709 (-)
LOC110531297 tkt coding downstream 411014 77210420 ~ 77227773 (-)
ngfa LOC106592688 coding upstream 26119 77698100 ~ 77725335 (-)
zgc:194242 NA coding upstream 175312 77847293 ~ 77854016 (-)
LOC110532870 NA coding upstream 381218 78053199 ~ 78058388 (-)
etv7 LOC106572981 coding upstream 408415 78080396 ~ 78105379 (-)
LOC110531300 lgr6 coding upstream 452694 78124675 ~ 78227314 (-)
G842803 NA non-coding downstream 20359 77617919 ~ 77618428 (-)
G842799 NA non-coding downstream 38411 77600137 ~ 77600376 (-)
G842796 NA non-coding downstream 54880 77583663 ~ 77583907 (-)
G842675 NA non-coding downstream 65145 77572737 ~ 77573642 (-)
G842672 NA non-coding downstream 67656 77570464 ~ 77571131 (-)
G842825 NA non-coding upstream 15893 77687874 ~ 77688113 (-)
G842834 NA non-coding upstream 43268 77715249 ~ 77717305 (-)
G842835 NA non-coding upstream 45596 77717577 ~ 77718287 (-)
G842841 NA non-coding upstream 63561 77735542 ~ 77735743 (-)
G842543 NA other downstream 273427 77365019 ~ 77365360 (-)
G842449 NA other downstream 595392 77042589 ~ 77043395 (-)
G842335 NA other downstream 778822 76856457 ~ 76859965 (-)
zgc:113363 LOC106572953 other downstream 975728 76656942 ~ 76669135 (-)
G842858 NA other upstream 92120 77764101 ~ 77764737 (-)
G842859 NA other upstream 94330 77766311 ~ 77766840 (-)
G842978 NA other upstream 274167 77946148 ~ 77946428 (-)
G843107 NA other upstream 409167 78081148 ~ 78081551 (-)
G843375 NA other upstream 770245 78442226 ~ 78442622 (-)

Expression


Co-expression Network