G842858


Basic Information

Item Value
gene id G842858
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 77764101 ~ 77764737 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU959575
atttctcggttctgttatttccgctgaaggcattaagatggatcccgctaaggtccaagctgtcattgattggcccgtccctaagtcacgcgtcgagttgcagcgctttctcggcttcgcgaatttctatcgtcgtttcatctgtaatttcggtcaggtggcagctcctctcacagcccttacttctgtcaagacgtgctttaagtggtccgtttccgcccagggagcttttgatctcctcaagaatcgttttacatccgcacctatccttgttacacctgacgtctctagacagttcattgtcgaggttgacgcgtcagaggtgggcgtgggagccattctttctcagcgctccttctctgacgacaaggtccacccttgcgcgtatttttctcatcgcctgtcgccgtcggaacgtaactatgatgtgggaaaccgcgaactgctcgccatccgcttagccctaggcgaatggcgacagtggttggaggggg
>TU959577
ttcgtttaccttgacgatatcctgattttttcaccgtcactccagattcatgttcagcacgttcgacgtgtcctccagcgccttttagagaattgtctttttgtgaaggctgagaagtgctcttttcatgcctcctccgtcacatttctcggttctgttatttccgctgaaggcattaagatggatcccgctaaggtccaagctgtcattgattggcccgtccctaagtcacgcgtcgagttgcagcgctttctcggcttcgcgaatttctatcgtcgtttcatctgtaatttcggtcaggtggcagctcctctcacagcccttacttctgtcaagacgtgctttaagtggtccgtttccgcccagggagcttttgatctcctcaagaatcgttttacatccgcacctatccttgttacacctgacgtctctagacagttcattgtcgaggttgacgcgtcagaggtg
>TU959573
atttctcggttctgttatttccgctgaaggcattaagatggatcccgctaaggtccaagctgtcattgattggcccgtccctaagtcacgcgtcgagttgcagcgctttctcggcttcgcgaatttctatcgtcgtttcatctgtaatttcggtcaggtggcagctcctctcacagcccttacttctgtcaagacgtgctttaagtggtccgtttccgcccagggagcttttgatctcctcaagaatcgttttacatccgcacctatccttgttacacc
>TU959576
ttcgtttaccttgacgatatcctgattttttcaccgtcactccagattcatgttcagcacgttcgacgtgtcctccagcgccttttagagaattgtctttttgtgaaggctgagaagtgctcttttcatgcctcctccgtcacatttctcggttctgttatttccgctgaaggcattaagatggatcccgctaaggtccaagctgtcattgattggcccgtccctaagtcacgcgtcgagttgcagcgctttctcggcttcgcgaatttctatcgtcgtttcatctgtaatttcggtcaggtggcagctcctctcacagcccttacttctgtcaagacgtgctttaagtggtccgtttccgcccagggagcttttgatctcctcaagaatcgttttacatccgcacctatccttgttacacc

Function

NR:

description
Pol polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU959575 False 494 TUCP 0.53 1 77764101 77764594
TU959577 False 468 lncRNA 0.49 1 77764270 77764737
TU959573 False 279 lncRNA 0.50 1 77764316 77764594
TU959576 True 422 lncRNA 0.49 1 77764316 77764737

Neighbor

gene id symbol gene type direction distance location
ngfa LOC106592688 coding downstream 38935 77698100 ~ 77725335 (-)
LOC110531298 LOC106572998 coding downstream 71220 77644076 ~ 77693050 (-)
LOC110531295 LOC106572974 coding downstream 219882 77454472 ~ 77544388 (-)
LOC110529252 LOC106592002 coding downstream 396187 77358028 ~ 77368083 (-)
LOC110532861 LOC105006798 coding downstream 409112 77267361 ~ 77355158 (-)
zgc:194242 NA coding upstream 82556 77847293 ~ 77854016 (-)
LOC110532870 NA coding upstream 288462 78053199 ~ 78058388 (-)
etv7 LOC106572981 coding upstream 315659 78080396 ~ 78105379 (-)
LOC110531300 lgr6 coding upstream 359938 78124675 ~ 78227314 (-)
LOC110531296 NA coding upstream 491212 78255949 ~ 78263583 (-)
G842853 NA non-coding downstream 6486 77757581 ~ 77757784 (-)
G842850 NA non-coding downstream 12263 77751784 ~ 77752007 (-)
G842849 NA non-coding downstream 16174 77747875 ~ 77748096 (-)
G842848 NA non-coding downstream 18007 77746060 ~ 77746263 (-)
G842847 NA non-coding downstream 19374 77744029 ~ 77744896 (-)
G842881 NA non-coding upstream 64096 77828833 ~ 77835979 (-)
G842886 NA non-coding upstream 69500 77834237 ~ 77835401 (-)
G842925 NA non-coding upstream 122834 77887571 ~ 77887937 (-)
G842965 NA non-coding upstream 156457 77921194 ~ 77930977 (-)
G842973 NA non-coding upstream 178144 77942881 ~ 77943208 (-)
G842543 NA other downstream 398910 77365019 ~ 77365360 (-)
G842449 NA other downstream 720875 77042589 ~ 77043395 (-)
G842335 NA other downstream 904305 76856457 ~ 76859965 (-)
zgc:113363 LOC106572953 other downstream 1101211 76656942 ~ 76669135 (-)
G842859 NA other upstream 1574 77766311 ~ 77766840 (-)
G842978 NA other upstream 181411 77946148 ~ 77946428 (-)
G843107 NA other upstream 316411 78081148 ~ 78081551 (-)
G843375 NA other upstream 677489 78442226 ~ 78442622 (-)
G843824 NA other upstream 990803 78755481 ~ 78757103 (-)

Expression


Co-expression Network