XLOC_002740 (si:ch73-111e15.1)


Basic Information

Item Value
gene id XLOC_002740
gene name si:ch73-111e15.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22110842 ~ 22117121 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005088
aaattcatGACTTTATAGATGCTTCTAATCTTACAGGATGTGTTTGATGTCAAATCTGATGTTGTATACTAACCACGTGTTTAACAAACCGTGTTAACAAGAAGAAAAGTGCTGACTATAACACATCTAAACAGGAACAACAATCATAACAGTTTTTCTACACTATAGAGCAGACATGGATGATGATATTTATAAGAATGTGAACGGGACGGAGTCTGAGGGAATGAACAGAGAGCGAGGGGTGAAGATGGAGGATATGTATGTGAATGCAGGCTCTGTGGGAAACCATGACTATCGGACTAATTCAAACACACAACAACCACCTCAAAATACAGGAAGCAATCCAGTGAAGACGAGAAGCTCCAGAGCAGCCTTAGTGTGTTTGGTGTTGCTATGTTTTCTTCTGCTGACTGCAGTCATAGCGCTGAGCGTGTACATCTATACAAACCAGCCAAACTACCCTGAAGAGAGACACCAGCTACTAACTAAAATCACCAACCTCACAGAAAACAAAGATGAGTTGTTGACAAATATTGAAAACCTTCTGAAAGACAGAGAGCAACTTATACAGCAACATCAGATTATTGCTGGGTGGACTTACTTTCAATCCAGTTTTTACTACTTGTCCAATGAGTCGAAGAGCTGGACTGACAGCAGAGGAGACTGTAAAGGCAGAAAAGCAGATCTGATCACCATAAACAATCGACAGGAACAAGATTTTGTAATGACCCTCACTCGTAATAAGGAATTCTGGATTGGTCTGACTGACAGTGAAAAAGAGGGCCAATGGAAATGGGTTGATGGCAGTACACTGACCACTGGGTTCTGGGCTTCCTTTCGATCAATAACTGAGCCCAATGGAGGGACAAGAGAGAACTGTGTTTTGACTCATTTAAAAAGACACCCTGAGTTAATAGGATGGATTGATCATAATTGTGATGCTTCTTATCAATGGATCTGTGAGAAGAGTATTTTACCAGTTACTTTTTAAGAAGCAAAAAAGTTTTGTTATAATGTTAAgcttaaaattacaattaaaaaatgtaaatgtatctgGTCAAGTCTAAGTATACATAAGCAGGGGTTTTTAGTCTTTAGATGACTTTGACCGCTAAAAAGGAACATAAAGGAAGCCTACTGTAtattcagtgctcagcataactgagtacaccccattttgaaaatcaatattttatccatttctcagtgaataatgtattttggtgcattttaacaaaacagatcTATTAaaaggatatatttattaaaagagTATTTTGGtcaacaaacatatttagaaatttaaagataatacaattaaatttaagtaaaatatagaaaaaaatacaacctacaacctttttttattctcttgatttttactctttttttattatttgtatgtaatatttttctataacatatacattagGCTTTGCTattttttggaccgttatcgtaagtaattttgttagataagctccagatttggcttcagtactgactaatctaatgtatatatgcacaaatataatattgcacagcttcctattaaaactatacatttaaaagatagatttgtgaggggtgtacttatatatgttgaGCACAGAAGCACTTTATACACCTCTTTGGTCAGTTATGATGTATCAAGGTCTGATATTTTCTAATAAT

Function

symbol description
si:ch73-111e15.1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CLEC4C (C-type lectin domain family 4 member C) and CLEC4E (C-type lectin domain family 4 member E).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-28 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CLEC4C (C-type lectin domain family 4 member C) and CLEC4E (C-type lectin domain family 4 member E).

Ensembl:

ensembl_id ENSDARG00000008182

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005088 True 1674 mRNA 0.35 5 22110842 22117121

Neighbor

gene id symbol gene type direction distance location
XLOC_002739 BX005027.3 coding downstream 4511 22097328 ~ 22106331 (-)
XLOC_002738 ponzr10 coding downstream 15337 22088465 ~ 22095505 (-)
XLOC_002737 ugt5g2 coding downstream 24216 22082596 ~ 22086626 (-)
XLOC_002736 tlx3b coding downstream 53841 22051054 ~ 22057001 (-)
XLOC_002734 FO744833.2 coding downstream 155611 21913105 ~ 21955231 (-)
XLOC_002741 ponzr2 coding upstream 6710 22123831 ~ 22127942 (-)
XLOC_002742 cldn7b coding upstream 27647 22144768 ~ 22150419 (-)
XLOC_002743 fgf11b coding upstream 44464 22161585 ~ 22249444 (-)
XLOC_002744 BX005194.1 coding upstream 154668 22271789 ~ 22271903 (-)
XLOC_002745 NA coding upstream 364037 22481158 ~ 22491458 (-)
XLOC_002732 NA non-coding downstream 266979 21646154 ~ 21843863 (-)
XLOC_002731 NA non-coding downstream 461114 21627807 ~ 21649728 (-)
XLOC_002730 BX957322.2 non-coding downstream 537385 21570196 ~ 21573457 (-)
XLOC_002725 BX004800.2 non-coding downstream 1202286 20908442 ~ 20908556 (-)
XLOC_002724 NA non-coding downstream 1222082 20842918 ~ 20888760 (-)
XLOC_002748 NA non-coding upstream 413664 22530785 ~ 22534924 (-)
XLOC_002749 NA non-coding upstream 437228 22554349 ~ 22567208 (-)
XLOC_002750 NA non-coding upstream 487152 22604273 ~ 22607715 (-)

Expression


Co-expression Network