Gene
RNA
| Item | Value |
|---|---|
| gene id | rpl23a |
| gene name | rpl23a |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 120264 ~ 127707 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rpl23a | Predicted to be a structural constituent of ribosome. Acts upstream of or within pancreas development and regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; and epithelial cell of pancreas. Orthologous to human RPL23A (ribosomal protein L23a). |
| description |
|---|
| 60S ribosomal protein L23a-like |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02893 | RP-L23Ae, RPL23A; large subunit ribosomal protein L23Ae |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021617305.2 | False | 849 | mRNA | 0.47 | 5 | 120264 | 127707 |
| XR_005053505.1 | True | 1128 | mRNA | 0.51 | 5 | 120264 | 127707 |
117,000
118,000
119,000
120,000
121,000
122,000
123,000
124,000
125,000
126,000
126,000
127,000
128,000
129,000
130,000
131,000
132,000
133,000
134,000
135,000
NC_048574.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110533227 | LOC105006947 | coding | downstream | 1850 | 99960 ~ 118414 (-) |
| LOC110533226 | LOC107554284 | coding | downstream | 22536 | 92131 ~ 97728 (-) |
| heatr6 | heatr6 | coding | downstream | 28876 | 44407 ~ 91388 (-) |
| LOC110533228 | LOC106604062 | coding | upstream | 3437 | 131144 ~ 211405 (-) |
| LOC118966673 | NA | coding | upstream | 57682 | 185389 ~ 189283 (-) |
| LOC110533253 | bach1 | coding | upstream | 478687 | 606394 ~ 613031 (-) |
| sodc | sodc | coding | upstream | 489770 | 617477 ~ 624914 (-) |
| mis18a | LOC106604044 | coding | upstream | 569823 | 697530 ~ 725493 (-) |
| G844204 | NA | non-coding | downstream | 80484 | 39575 ~ 39780 (-) |
| G844199 | NA | non-coding | downstream | 87045 | 32974 ~ 33219 (-) |
| G844195 | NA | non-coding | downstream | 89997 | 30055 ~ 30267 (-) |
| G844191 | NA | non-coding | downstream | 93913 | 26027 ~ 26351 (-) |
| G844524 | NA | non-coding | upstream | 63205 | 190912 ~ 192768 (-) |
| G844527 | NA | non-coding | upstream | 87613 | 215320 ~ 223483 (-) |
| G844529 | NA | non-coding | upstream | 99021 | 226728 ~ 227268 (-) |
| G844528 | NA | non-coding | upstream | 99765 | 227472 ~ 228154 (-) |
| G844530 | NA | non-coding | upstream | 100738 | 228445 ~ 228872 (-) |
| G844686 | NA | other | upstream | 443818 | 571525 ~ 573938 (-) |
| G844794 | NA | other | upstream | 654317 | 782024 ~ 782738 (-) |
| G844847 | NA | other | upstream | 716966 | 844673 ~ 846752 (-) |
| G844866 | LOC106591684 | other | upstream | 756453 | 884160 ~ 890758 (-) |
| G844975 | NA | other | upstream | 897947 | 1025654 ~ 1027442 (-) |
