LOC110534824 (LOC106604036)


Basic Information

Item Value
gene id LOC110534824
gene name LOC106604036
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 792950 ~ 823863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989440.1
CGCTATTGATGGATACTAATGACGTAAGTTTAGTCTGTATTCGTGCTTGACGACGGGACCACTCTGTGTCTGGGTGAAGAATGAGAAGGACCACCATTTCCATCAGAGGAATTATCATTAGGACAAATCGTTGAGTTTTTAAatcagttttttttgtgtgttttttttaattttttacatttctagGTGTTGGAAACTTTACATGAGATGAAAGGCGCAGAGAGACTCATCTTTCTGGGCTGGCTGCTGACAGgtacCCTGTGTCAAGGTGGGGTGGAAGGAACGGTCTGCACTAATCCTCCCAGGAACACGTCAGTATCTGTGATTCCCTCTGGCGAAGTGTTAGAAggcagttcagtgactctgacctgcagcagtgatgccaacccaccAGGGATCAGCTACCGCTGGTACTCAGTGAGAGCGGGTGACACCAGATCTACAGGCTATGGGCCGGTCCTGAGGACCAAAATCTGGGCGGACAATACCCTCTTCTACTGTGAAGCCAAGAATATGTGTGGAGCACATAATTCAACGATCACTAAAGTAACTGTGTGGTATGGTCCTAAAACCATGTCTGTGTCAGTCACCCCATCTGGACCCGTGTTTGATGGTGCGATGGTGAATCTGACCTGCAGCAGCAATGGCAACCCACCAGTAAGCAGCTTCACCTGGTACAGTGTGAAGGGAGACCAGGCGACACAGCTTGGGGTTGGGACGAGGctagagaccagtgtgtctgcAGAAGTCCACCAGTTTTACTGTGAGGGCAGAAACGACCACGGAGGACAGAACTCAACGCTGATAGAAGTGGTTGTAcagtATCCTCCCAGAAACACGTCAGTATCAGTGAATTCCTCTGGTCCAGTGTTGAAGggcagttcagtgactctgacctgcaTCAGTGATGCCAACCCACCAGTGTCCAGCTATAACTGGTACTCAGTCGACGAGAGCGAAACACGCAGTGTAATAGGAGTTGAACAGATGTACACAGTAGCTAATGTCAATGGTAATACACAGTACTTCTGCATAGCTAAAAATCGACACGGATCGGACAATTCAACAACGCTCCAGCTCGACATTCAGTATCCTCCCAGGAACACATCAGTATCTGTGAGTCCCTCTGATTCTGTGTTAGAGGACAATtcagtgactctgacctgcagcagcGATGCCAACCCACCAGTGACCAGTTACCGCTGGTACTcagtgagagaggggaaggaggactATGTGGCCTCTGGACAAAAAATAATCCAGGCCACAATGAATGTTATTGACGGAAGAGAATACTACTGTAAAGCCCAAAATCATCATGGAGAGGATCAGTCAGCGACTACAAACGCATCTGTGGAGTTTGCTCCTCAGATCTCATCCTCCTCTCGCTGCCTCCACTCCAGATCTCAGGTCAGCTGTACCTGTGACAGCCACGCTAACCCCGCCCCCTTGGTGCAGTGGCGTCTGTCTGGCCGACATGTCAATCATTCCACAGCCACGGCCATCAGGGAGGAGCCTCTGGGCAGAATTGGCCTCAGGAGCACTCTGACCATCCGTCAATCACAAGAAGACACGCCCACTGCACTTTGCCTCAGCTCCAACTCTCAGGGCTCTGCCAGTCTGCAGCTTTGTGTCACCTCCACAGGTTACCAGATGCTGTCTCTGTTGGTGGGAGCTGGGGCAGGTGCTGCTGGGATGCTGTTGCTGTGTGTTGTAACATGTGTCATTGCCAGGAGATTGCATGCCAAGACAACCTGGGATCTGAAACCGGAGGACATAACAGAGCTCATACTAACTGACTGGACTCTCTCTCAGGAAGAGGACTCTCTGTACGCCAGTAAATCCACACTGACCGGACACCCGAGAGCCAACGGGGCCAATGGGAAAGGGACCAGAGGGGttaatccagacctccatgggccCCAACCCACAGACCCTCCTGGAGGTCTACACTACAAACCCCCACCCATAGGCCCCCTTAACAGTGATCACGTACCCCTCCAGCACTCCAGCCTGGACACCACCACGACCAGGATAGAGGGGTAGGGAGCGGGGGGTGACAtcaggggtgagagaga
>TU962061
tctctctccaccttataccaactctctccacaccttataccaactctctccacaccttataccaactctctccacaccttataccaactctctctccaccttataccaactctctctccacattATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATaccaactctctctccaccttataccaactctctccacaccttataccaactctctccacaccttataccaactctctccacaccttataccagctctctccacaccttctaccaactctctccccaccttatACCAACAATCTCTCCACCTTATACCAACTCTCTCCACCTTCAACCAACTCCCCACACCTTACACCAAATCTCTCTCCACCTTCTaccaactctctctccaccttaTACCAACTCTCTCCACCTTATACCAACTATCTCTCCACACCTTCTAccaactctctccccaccttatACCAACTCTCTCCACCTTATACCAAATCTCTCTCCACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACAAACTCTCTCCACACCTTAtaccatctctctccccaccttctaccaactctctctccaccttctacCAACACTCTCTCCACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACACCTTATACCAACTCTCTCCACCTTAtaccaactctctctccatcttataccaactctctccacaccttctaccaactctctctccaccttctaaCAACTATCTCTCCACACCTTATAccaactctctccccaccttataccaactctctctccatcttataCCAACTCTCCACACCTTTTAACAATTTGTGCTCAccagcacatagttttttTTAGTTTTTCCATGCAGATTGTTTAGTGTGTCTTCTATCTTCTAGACTCTCTCTCAGGAAGAGGACTCTCTGTACGCCAGTAAATCCACACTGACCGGACACCCGAGAGCCAACGGGGCCAATGGGAAAGGGACCAGAGGGGttaatccagacctccatgggccCCAACCCACAGACCCTCCTGGAGGTCTACACTACAAACCCCCACCCATAGGCCCCCTTAACAGTGATCACGTAC

Function

NR:

description
myelin-associated glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989440.1 False 2078 mRNA 0.51 11 792950 823863
TU962061 True 1482 lncRNA 0.47 3 793032 796423

Neighbor

gene id symbol gene type direction distance location
mis18a LOC106604044 coding downstream 67457 697530 ~ 725493 (-)
sodc sodc coding downstream 168036 617477 ~ 624914 (-)
LOC110533253 bach1 coding downstream 179919 606394 ~ 613031 (-)
LOC110533228 LOC106604062 coding downstream 581545 131144 ~ 211405 (-)
LOC118966673 NA coding downstream 603667 185389 ~ 189283 (-)
LOC118966676 NA coding upstream 55784 879647 ~ 885369 (-)
LOC118966677 NA coding upstream 62253 886116 ~ 891268 (-)
LOC118966679 LOC106594186 coding upstream 92425 916288 ~ 922345 (-)
LOC118966678 NA coding upstream 98492 922355 ~ 925356 (-)
LOC118936903 NA coding upstream 321997 1145860 ~ 1212061 (-)
G844816 NA non-coding downstream 1047 789810 ~ 791903 (-)
G844801 NA non-coding downstream 5064 787676 ~ 787886 (-)
G844800 NA non-coding downstream 5914 786820 ~ 787036 (-)
G844799 NA non-coding downstream 6285 786429 ~ 786665 (-)
G844781 NA non-coding downstream 32629 758825 ~ 760321 (-)
G844859 LOC106604021 non-coding upstream 42561 866424 ~ 869797 (-)
G844865 NA non-coding upstream 56383 880246 ~ 894219 (-)
G844870 NA non-coding upstream 73090 896953 ~ 897162 (-)
G844937 NA non-coding upstream 129202 953065 ~ 954581 (-)
G844968 NA non-coding upstream 194909 1018772 ~ 1019917 (-)
G844794 NA other downstream 10212 782024 ~ 782738 (-)
G844686 NA other downstream 219012 571525 ~ 573938 (-)
LOC110533226 LOC107554284 other downstream 695255 92131 ~ 97728 (-)
heatr6 heatr6 other downstream 728250 44407 ~ 91388 (-)
G844847 NA other upstream 20810 844673 ~ 846752 (-)
G844866 LOC106591684 other upstream 60297 884160 ~ 890758 (-)
G844975 NA other upstream 201791 1025654 ~ 1027442 (-)
G844976 NA other upstream 204277 1028140 ~ 1029996 (-)
G845133 NA other upstream 410684 1234547 ~ 1235708 (-)
G844820 NA non-coding upstream 15916 812339 ~ 812605 (-)
G844823 NA non-coding upstream 26340 822763 ~ 823054 (-)

Expression


Co-expression Network