LOC110534823


Basic Information

Item Value
gene id LOC110534823
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 1897873 ~ 2003474 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110534823
ATGAACTGGGATACGTTTAGAGATGAATGGGAGTACTATACACTAGCCACGGACCTTCTGGAAAAGGATGATGATGTAGTGGCTGCCACATTGAGGACTATAATGGGAGCCGAATACCAACACAACCTGAACCTAACAGCAGCTCAGCAAGagATCGAGGCCAAGGAGGCTTGTGATTGGCTAAGGGCTGCAGGGTTCCCACAGTACGCCCAGTTCTACGaagactcccAGTTTCCTGTAGATATCTCATCAGTAAGTAGGGACCATGTCTTCTTGGACAGAGACCTGGTCGAACCGCTGTGTCGACGTCTCAACACCCTGAACAAGTGTTGCTCCATGAAACTAGACGTCAGCCGCCCCAGGAAGAAAACTGATGATTCGGACCCGCTGGCCATCAGTAAGAGATGGACCTTTGAGTGGAACAGCCGGCGCTGGTCCCGCCTCCAGGACATGCACTTCCTGCTGGGCTCGCCCAATGAGAGCAACCCTGAGGGGTGTCAGGGCGAGGGGGAGGGACTCCTGCGGAGCACGGTGAGCAGTGAGAGCGTCTTAACGGACATCAGCGAACCAGAGATCACGGATATATCCTCTCTTCACAGCCAAGAATCTCTAGGAGCCATGCTCCCTGACTCGGTCTCTATGGCATCGCTGGTCGGGCCTTACCAGCCTCCGAGGGACATGTCCCACTACAACTCTCTACCAATCAAAAGCAGCCGTCATGGCCAGGGTGGGCGGAGTCCGGCAAAGTCCTTCCTGCGTCGCATGGAGATGATGCGTACGTGGGGGCCGTCCTTCAGGAGGAAGACAGGAAGTGGACGGGCTCTGGTCATCAGTGGGCCGGTCTTACAGGGGCAGGATCCCCAGGCACTACAGACACTCCACTGTGTCCCCATCAACCAATCAGATGGCAGTCCTCAtcctctccaccaatcagacaaCATCACATCCCCTGTTGCCCATGGAGATGGCAGCGAGGGCCAATCAGAGACAAGCAGTGTGAGTTCCATGAGTCCTAGTGTGAGGCAGAGAGTCTCTAAGCCTCGGCCTAAAAGAGGACGTGTTTACCTAGAAGACACGGAGCTGCTCTCTGGCGCCCCCCATGGCCGGAGGACTGAAGCACAACAGAGCCTGTTCAGCAGGAACCACTTCCACTTCCGCTCATACGAGGACCTGCTGGTCCACATCCCCAAGGACCACAAACCAGGCACCTTCCCCAAAGCCCTGTCTATAGAGAGCCTAGCCCCTGTCACCGACCACCAGCGCCagaccccctctccctctccgctctACCCCAGTCAAGGCTCCCCCTGGGAAGGCATGGCTCTGTCCAAGAAGCCTCCCTGTCCTGGAGCTCCGCGTGGCAGCAGGGTGAGTGTGTATGACAACGTCCCTGGGTCTCACCTTTACACGTCCACAGGTGACCTGCTAGATGTGGACCGAGACGATCACCTGTTCCCCCACCTGGATGACATCATCAGTCACGTCAGCGGCCTGCAGCAGATTGTAGACCACTGGAGTCGCAGCATGCTgacagagggacaggagggggaggcagggaacgaggaggaggggggagagggtgagagagacggGGTCTCCCTAAATGATACGGACCctacagggaccagagagaggagagactctGGAGTGGGAGCTTCCCTTACGAGACCACGtcACCGGTGGCCGAGCTTCCGCCTGTCTGACCGTCTGAGCCAATCAGACTCCTCGCTACAGATCAGTACCCAATCAGCTGTCCAGCTCAGCTTGCTCAAGAAGTTCTCTCTGCTCCGACTCACAGCCATCATGGAGAAATACTCCACATCTAACAAACATGGTTGGACCtggtctGTCCCTACGTTTCTGAAGCGTATGAAGgttgaagacagtagagagaagggtgtgtttggGGTTCCCCTCATAGTACATACACAGCGTTGTGGTTATCCTCTACCCCTCTGTCTACAGCAGGCCCTGAGTCATCTCAGAATGCACTGCCttgaccagGTGGGTCTGTTCCGTAAGTCCGGTGTAAAGTCCCGTATCCAGGCGTTGAGACAGGAGTGTGAGACCAGTCCTGGCAGTGTGTGTTACGAGGACCAGTCAGCGTACGACGTAGCAGACATGGTTAAACAGTTTTTCAGAGACCTTCCTGAACCTCTACTGACCAGCAAGCTGGGAGAGACCTTCCTACACATCTACCagtACGTACCTAATGAGCACAGGTTGCAGGCCGTGAGGGCGGCCATCTTGCTGATGTCAGACGAGAACAGGGAAGTGCTCCAGACACTGCTCTTCTTTCTGCGCGATGTCACTTCCTGTGTCGAGGAGAACCAGATGACCCCTATGAACCTGGCTGTGTGTCTGGGCCCCTCTCTGTTCCATCTCAACATACTGAAGAACGGCAACCTGTGCCCCaggTCCATCCAGAGGAAGTATGCTACTGGTCGGCCAGACCAGAAGGACCTTAATGAGAACCTTGCTGCCACACAGGGCCTGTCTCACATGATCACTGAGTGCCAACACCTGTTCGAGATCCCACAGGAGACGGTGAGCCAGTCTCCGAACTCCTACATGGAGGCTGAGTTACTAGCGCCCCCTCTGAACGATCTGTGTAAGACatacgaggaagaggaggaggaagggtccTACCACACACTCATGGAGGGGCTGGTGCGGGGCCTACTGAAGGAGGCCAGAGACAATAGTAAAGGATGGGTGTCCCGGGCCTCCACCGACCACACTGAACTGGCCTTCAAAAAGGTGGCTGATGGTAACCCCCTGCGGCGGTGGCGTGTATCGGTGGAGGTGTGTGCCCcgcccagtgatgtgttggagAGGCTGCTGAGGCAGCGCCCCCTGTGGCAGACAGACGTACTGGAGGAGAAGGTTCTGGAAaccctggacagacagacagacatctaccAGTACAGCCTGCAGAGCATGGCACCACACCCCAACACTGACTATGTGGTACTGAGgtcatgGCGTAACGATGTGTCTAAGGGTtgcagtgtgttggtgtgtgtgtcagtggaccAGGAGGACAGTCCAGCCCAGCCTGCAGTCAGAGGAGTAGTTCTAGAGTCCCACTACCTTCTGGAATCCTGTGGAACTGGCAGGTCCAGGCTCACACACATCTGCAGGGTTGACCTGAaGGGCAGGTCTCCAGAGTGGTATAACAAGGCCTTTGGTCACCTGTGTGTCTCTGAGGCCCAGAGGATCCGTTCCTCCTTCCACCCTACAAACCCCCCCAGGACCTGAGACCAAGAACTGAACCCCAGGAATAGGTTCTGAGGCTGGGCTACACCGGCATGGAGCATGGACCAGAGGACCAAAGAAAagttactgtagaatacaggagaACAGGAGTGCTAGAACAATGGACTCAGTACCTGGAACAATAGACCTAGAACCTTTGAATCGTCCGAGATTAATGGGTCTAGAACCAAGACAACGGTGGGCTAGAACCATGCACCTAGTTCCAACAATAAATTACTAGATCCATTGACCCAGAAAAAGGAATCCATTGTCCTAGATCCATGGAACTAGAACCAGGGAACACTCGGTGGACCTAGAACTTGGAACCATGTTTCTTCATTCTGAAACCACTGATCcagggaatggagagagacaggcaacATCTCTCTGGAACCAGTGACCTATAGAACCAGGGAACATCGGCGATTAAGATCTTAGAAACAGGTAAACAGAACGATCCAGAAGTTGGAACATGGAATACGGAATGATCTAGAACTTGGAACCAGGGACACCAAACCATTTAGAACTTGGAAGTAGGGACACTGAACAAACTAGAACTTGGAAGTAGGGACACTGAACAAACTAGAACTTGGAAGTAGGGACACTGAACAATCTAGAACTTGGAACCAAGGACACTGAACAAACTAGAACTTGGAAGAAGGGACACTGAACAATCTAGAACTTGGAACCAGGGATACTGAACAATCTAGAACTTGGAAACAGAACACTGAACAATCTagaacaggggtgtcaaacataaaAAGGGGTGTCCAATCTAAAACTTTGAACCAGGGATACTGAGAAATCTAGatctttgttccatgtccatggTTCTATCTGGAACGATCTAGAATTTAGAACCATGGATTTTGAACGATCTAGAATTTAGAACCATGGATTTTGAACGATCTAGAATTTAAAACCAGGGATATGGAACGATCTAGAATTTAGAACCAGGGATTTTGAACGATCTAGAACTTAGAACCAGGGATTTTGAACGATCTAGAATTTAAAACCAGGGATTTGGAACGATCTAGAATTTAGAACCAGGGATTTTGAACAATCTAGAATTTAAAACCAGGGATTTGGAACGATCTAGAAGTTAGAACGATCTAGATTGAACTTGAAGACATCTCTGGCTCCTACAGCTTTATCTCTGCTCTCATTACCACTGTCCCTTTTAAACTGGCATCATTAGTCATAATGATATGAATAATATCATCTCTATTGTCTGTGTTAATTATTTGATCTATTGTATTACCATTTGTTATATTAATATTATGATGTCATCATTGTTGTATAATCGTTGATTTTGTTACGCTGTTATACAATGTCTGGGACATTTACCCATTTCACTGCTTCTGGgaagcgtgcgtgcgtgtgtgcgcgtgtgtgcgcgtgtgtgcgtgtgtgtgtgtgtgtaagagtgtgtgtgtaagagtgtgtgtgtaagagtgtgtgtgtaagagtgtgtgtgtaagagtgagAGCGAGTCTGTACACACAAAGTAAATAGGCAATAGGCAAACACATGGAAACAGCTGTCATTACCCATCAGATCATTGTCAtattgatatgtgtgtgtgtgtgagagagagagagtaagtatTGATATGCTAATGTTTGGGTGATAGGGTTCTCACGTGTTGTAAAGCAGTACTGTAACTGATCCTAACATAGGCCGCGCTCTACCATGCCGTTACCATGGGGTTACTAAACTCATGTATAACGCTATACTGTATTACCGTGCTAGTGTCGTCGCTAATGACAATACCATGGCGTTAGTGTGGCGTAGGGTTGCCGCGGTGTTGCAATGGCGTTACCGCGGCATCGCTAAACTGTGACATCGCTACGGTGTTGCTATGGTATCAGCATGGCATTTCCCTGGTTTGTTACCAAGGTCGCTGCTAAGCTGTACCGTTGCTatgagaggcagtagggatgaccagggatgttctctgtttagtagtgagtcctccagatcttaggcagtagggatgaccagggatgttctctgtttagtgagtccaccagatcagag
>TU963186
AATCCATTGTCCTAGATCCATGGAACTAGAACCAGGGAACACTCGGTGGACCTAGAACTTGGAACCATGTTTCTTCATTCTGAAACCACTGATCcagggaatggagagagacaggcaacATCTCTCTGGAACCAGTGACCTATAGAACCAGGGAACATCGGCGATTAAGATCTTAGAAACAGGTAAACAGAACGATCCAGAAGTTGGAACATGGAATACGGAATGATCTAGAACTTGGAACCAGGGACACCAAACCATTTAGAACTTGGAAGTAGGGACACTGAACAAACTAGAACTTGGAAGTAGGGACACTGAACAAACTAGAACTTGGAAGTAGGGACACTGAACAATCTAGAACTTGGAACCAGGGATACTGAACAATCTAGAACTTGGAAACAGAACACTGAACAATCTagaacaggggtgtcaaacataaaAAGGGGTGTCCAATCTAAAACTTTGAACCAGGGATACTGAGAAATCTAGatctttgttccatgtccatggTTCTATCTGGAACGATCTAGAATTTAGAACCATGGATTTTGAACGATCTAGAATTTAAAACCAGGGATTTGGAACGATCTAGAATTTAGAACCAGGGATTTTGAACAATCTAGAATTTAAAACCAGGGATTTGGAACGATCTAGAAGTTAGAACGATCTAGATTGAACTTGAAGACATCTCTGGCTCCTACAGCTTTATCTCTGCTCTCATTACCACTGTCCCTTTTAAACTGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110534823 False 5298 mRNA 0.41 15 1897873 2003474
TU963186 True 743 lncRNA 0.41 3 1898722 1899650

Neighbor

gene id symbol gene type direction distance location
LOC110534825 nbea coding downstream 16967 1597349 ~ 1880906 (-)
LOC110533263 NA coding downstream 307236 1586498 ~ 1590637 (-)
LOC110518095 LOC106604029 coding downstream 549951 1277329 ~ 1347922 (-)
LOC110533260 LOC106604035 coding downstream 624329 1268630 ~ 1273544 (-)
LOC118936903 NA coding downstream 685812 1145860 ~ 1212061 (-)
LOC110534810 s47a1 coding upstream 124220 2127694 ~ 2171793 (-)
LOC110534809 LOC106590903 coding upstream 192692 2193384 ~ 2217972 (-)
LOC110533230 LOC105028657 coding upstream 305070 2308544 ~ 2395996 (-)
LOC110534827 LOC106604014 coding upstream 1068406 3071880 ~ 3079986 (-)
LOC110534828 NA coding upstream 1089061 3092535 ~ 3093211 (-)
G845633 NA non-coding downstream 228 1897303 ~ 1897645 (-)
G845625 NA non-coding downstream 92428 1805206 ~ 1805445 (-)
G845624 NA non-coding downstream 93132 1801525 ~ 1804741 (-)
G845602 NA non-coding downstream 142750 1754842 ~ 1755123 (-)
G845588 NA non-coding downstream 177717 1719595 ~ 1720156 (-)
G845696 NA non-coding upstream 1555 2005029 ~ 2005464 (-)
G845697 NA non-coding upstream 2390 2005864 ~ 2006075 (-)
G845701 NA non-coding upstream 10478 2013952 ~ 2014160 (-)
G845706 NA non-coding upstream 15151 2018625 ~ 2018826 (-)
G845708 NA non-coding upstream 18223 2021697 ~ 2021965 (-)
G845570 NA other downstream 245880 1649940 ~ 1651993 (-)
G845133 NA other downstream 662165 1234547 ~ 1235708 (-)
G844976 NA other downstream 867877 1028140 ~ 1029996 (-)
G844975 NA other downstream 870431 1025654 ~ 1027442 (-)
G845769 NA other upstream 89761 2093235 ~ 2098359 (-)
G845814 NA other upstream 152916 2156390 ~ 2157099 (-)
G846125 LOC106599738 other upstream 639835 2643309 ~ 2643647 (-)
G846290 NA other upstream 745479 2748953 ~ 2753103 (-)
G845667 NA non-coding upstream 981 1900631 ~ 1900865 (-)
G845668 NA non-coding upstream 16347 1915997 ~ 1916510 (-)
G845672 NA non-coding upstream 28251 1927901 ~ 1928173 (-)
G845673 NA non-coding upstream 28705 1928355 ~ 1928569 (-)
G845674 NA non-coding upstream 30410 1930060 ~ 1930281 (-)
G845683 NA other upstream 66976 1966626 ~ 1967072 (-)

Expression


Co-expression Network