LOC110534810 (s47a1)


Basic Information

Item Value
gene id LOC110534810
gene name s47a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 2127694 ~ 2171793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989479.1
cgctctccctcgctctctctctctcgctctctcctttcttctcttgcCCCCTGTGTTCCTCTGGGAGCTATTTAATCAGttacagggatgtgtgtgtgtgtttctctgcctctacgaactgactgactgactgtgctACGTTACCTCACAGGgcacataatctctctctctttctgtccccctctagcttcccctttctttctctctctctctctctctctcactccctattctcttactctccctctctcacgctccctctccctctcttatgctccctctctcacgctccctctctccctccctctctctgtctctttctctcggcTGAATGGAGAAGGCAGAATTTGTAGGTTCATTGCCGGGGCCTGGCCTGGTTGCTGGGGATGTAGTTGCCTTGTCGGAGGTGGTGCGGGGTACAGGCGAGGAGCCGGCGGGGACAGTGGTCAGTTCCAGACTGttccgctgtgtgtgtgtccgacgCTGGATACCCCTGGCCTACAGAGAGGAACTCTACCATGTACTGAGACTCACAGGACCTCTGCTGGTGTCTCGGATCCTGAACTTCTTGCTCCCGTTTGTCATCACCATATTCTGTGGTCACCTTGGCAACGCAGAGCTGGCGGGATATGCACTGGGCTCTGCGGTGATCAATGTGACCACGACCTCTACGGGCTACGGACTGGCTCTGGCCTGTGATACACTCGTCTCTCAGacattTGGCAGCAGTAACCTGCACCGTGTGGGGGTGATCCTGCAGAGAGCAGTGTTGATCCTGCTGCTGCTCTGTCTGCCCTGCTGGGGCCTCCTCATCAACGCCCAAAACATCCTACTAGCCATGAATCAGGAGCAGGAGGTGGCCCGGATCGCCCAACTTTATGTGATGCTTTACCTGCCTGCTGTTCCTGCTATGTTCCTGCACCAGTTGCAAACAGCTTACCTACAGAAccagGGGATCATCCTACCTCAGATGtacacagcagcagcagctaacCTCATTAACCTGGCTGTGAACTACATCCTGCTCTTCAGCCTGGAGATGGGAGTCATagGCTCTGCTATAGCAAACAGCCTGTCTCAGATCACCATCAGTCTGCTCCTCTACTTATATATCTGTTGGAGAGGCCTCCACAAGAACACCTGGGCAGGCTGGTCCAGTGAGGCCCTCCAGGAGTGGGGTTCCTACATGCAGCTGGCCATCCCCAGTACCCTGATGGTCTGCTTCGAGTGGTGGGTCTGGGAGATAGGAGGCTTCCTcgctgGTATGCTAGGAGAGGTAGATCTTGCAGCACAGCATGTGCTGTTGGAGATAGGAGCCATTACCTACATGTTCCCTCTAGGTGTCCATGCCGCTGCCTGTGTACGGGTGGGGAACGCTCTGGGAGCAGGAGACACCTCCAGGGCTCTACTCACCTGCAAAGTAGCCCTGGTGCTCTCAGGAGTGCTGGCTGTGTTCCAGGGTATTGCCATCGGTAACTCCAGGCATGTGTTAGGCTACATCTTCACCTCAGATCAaGCCATAGTGGACAACGTGTCAGTGAACCTGGGGCTCTACACCTTCATACAGTTCTTTGATGCTCTACTGtgtgtgtgctcAGGTATCCTGGTTGGAGCAGGAAAACAGAAGATAGCTGCGCTGTCTAACCTGGTCTCATACTATTGCATTGGGCTTCCGGTCGGCATCGCTTTGATGTTCGCTGCTAAGCTCAGGATACTAGGTTTGTGGGTAGGTCTCTTCATCTGTGTCATCCTCCAGACTGGGTTCTTCATCGTCATCATCTTCAAACTCAACTGGCAGCTTGTTGCCAAGGAGGCCCAGGTGCGTGCTGGGAAGAGTGGGCTGGTAATGTGTGCTCCAGCAAAGCCTCCTATTGGACAGCCGCTGATTAAAACTCTGCTTCCAGAAGGTTCTCGAAGCAATGAAATGTCCCAGCCAGAGAGCGATGAATCCAAACCACCTGGTTACACGCCAGTCAGCacccagggaggaggaggaagtggggaAGAACAGCAGGAGGGCCCAGGTGTCCAGTCCAAAGGTCTGCTGTCTGCCTCCCAGctggtcctgaggagaggtttcACTCTGCTGACTGCGTTATTCCTCCTGGCCACAGGGGTCGCTGTTCACCTGGCCTGTCCCCCTCCTGCACCCTCCATCCACAGCCTCTCCAACCTCACCCTGGACTGGACCAACTCTTCTACCCCCACACCCCTCCTGGAGCTCACCTcacccctctgagacaggagagaggggggaaggaggggggagaggagaggggtagagggactGGGTTGAGTCTCTGCAGGGACCAATGGTGTCTGTATGAACTGAACAGCACAGTGCTGGGGTCCTGAGACTCTCCTGATCAGAGGAACAGCTGCcaccatctccccccccccccccccccccccccccccatggctgCCTGCACTGCAGTCCTCTCTTCTTCTATACTACTGTTCCTTCTAAAGATATATTTTTAGTCTCCCGACATGTTTCCATTATATTTGTCTTTCATTGTGATGTCTACTCAGTCTAATGTAGAACAGTTTTAATCTGGAAGCATGGAATCAGTGTAAATGTCTGATTTCCAATATATGAGATTATTTCCTATTGTATGTTGATGTGTGTGTACTTGTTTCCACAGTGTAAAGTCACTGCACTTGGCCTATTACCAGTTGAAACAGTGCTTTCAAATTGTCAAATAAGAGACTAACCGTGAGTTCTCAATGAAATGTCCAGCCAAATGACCGGCGGTCAGATCAATAAAAAATACTCTATATGGGTGAGATGTCAGGTACATTGTCTGCCTAAGTATTCACTGTAAACATGCTCGGGACATTAGCATTGCATTTACAATAAACCTATTCTAGCGGCATTAGCATCGTATATAAACCCATGCAAGGGGCATTAGCATCATATAGCATTAGCATCATATACAGTACAAACCCATGCTAGGGATGTTAGCATCGTATATAAACCCATGCAAGGGGCATTAGCATCATATAGCATTAGCATCATA

Function

NR:

description
Multidrug and toxin extrusion protein 1

GO:

id name namespace
GO:0006855 drug transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function

KEGG:

id description
K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989479.1 True 3023 mRNA 0.52 17 2127694 2171793

Neighbor

gene id symbol gene type direction distance location
LOC110534823 NA coding downstream 124220 1897873 ~ 2003474 (-)
LOC110534825 nbea coding downstream 246788 1597349 ~ 1880906 (-)
LOC110533263 NA coding downstream 537057 1586498 ~ 1590637 (-)
LOC110518095 LOC106604029 coding downstream 779772 1277329 ~ 1347922 (-)
LOC110533260 LOC106604035 coding downstream 854150 1268630 ~ 1273544 (-)
LOC110534809 LOC106590903 coding upstream 24373 2193384 ~ 2217972 (-)
LOC110533230 LOC105028657 coding upstream 136751 2308544 ~ 2395996 (-)
LOC110534827 LOC106604014 coding upstream 900087 3071880 ~ 3079986 (-)
LOC110534828 NA coding upstream 920742 3092535 ~ 3093211 (-)
LOC110533269 LOC104929447 coding upstream 979529 3151322 ~ 3153275 (-)
G845776 NA non-coding downstream 4383 2123022 ~ 2123311 (-)
G845767 NA non-coding downstream 42715 2084475 ~ 2084979 (-)
G845737 NA non-coding downstream 80933 2045633 ~ 2046761 (-)
G845732 NA non-coding downstream 89563 2034839 ~ 2038131 (-)
G845728 NA non-coding downstream 93751 2028033 ~ 2033943 (-)
G845817 tmigd1 non-coding upstream 5508 2177301 ~ 2178989 (-)
G845819 NA non-coding upstream 9630 2181423 ~ 2181883 (-)
G845823 NA non-coding upstream 18357 2190150 ~ 2190724 (-)
G845950 NA non-coding upstream 32204 2203997 ~ 2204388 (-)
G845769 NA other downstream 29335 2093235 ~ 2098359 (-)
G845683 NA other downstream 160622 1966626 ~ 1967072 (-)
G845570 NA other downstream 475701 1649940 ~ 1651993 (-)
G845133 NA other downstream 891986 1234547 ~ 1235708 (-)
G846125 LOC106599738 other upstream 471516 2643309 ~ 2643647 (-)
G846290 NA other upstream 577160 2748953 ~ 2753103 (-)
G846600 NA other upstream 1095956 3267749 ~ 3300488 (-)

Expression


Co-expression Network