LOC110533230 (LOC105028657)


Basic Information

Item Value
gene id LOC110533230
gene name LOC105028657
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 2308544 ~ 2395996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989484.1
CCTTGCAGTCAGAGGAGCTAGCTGCCTGGAATAGCTGTGCTGCCATGTgattcctcatggttctattttaGAACAGCACTGGTCTCTACACCACCAGCACTCACACTGGAGGAGTTAACAGATATACCTACTAATCAATCTACTAtgctctctgtccgtctctcttccttcctttctctctctctctctctctctctctctctccgtcctctctttCAAGTATAACTCCTGGCGGTTGGTTGTGAGTGTATGTGACCTCTCccctctgacctttgacctccgTCTGACTGTGACCCCTCAGCATGGCCCTGGAGAAGCTGCTAGGCTTTGGGAAGCAGCTGCTGCGTGTCAAGGTTGTGGACTGTAACAGTGAAGATTCCCGTCTGTCCCGATGTCTCAACACCTTCGACCTGGTGGCTTTGGGGGTGGGCAGTACTCTGGGAGCTGGGGTCTACGTCCTGGCTGGGGCCGTGGCCAGAGAGAATGCAGGTCCTGCCATTGTCCTATCCTTCTTCATCGCAGCGCTGGCCTCTGTGATGGCTGGTCTGTGTTATGCTGAGTTTGGGGCCCGCGTCCCCAAGACGGGCTCAGCCTACCTGTACAGCTACGTCACAGTGGGAGAACTCTGGGCCTTCATCACGGGATGGAACCTCATCCTTTCTTACGTTATCGgtaCCTCCAGTGTAGCACGGGCATGGAGCGCAACGTTTGATGAGTTGACAGGGAAACATATAGAGGCGTTCTGCAGACAGTACATGACCATGAAAGCACCTGGGATACTGGCAGAGTACCCTGACATGTTCGCTGTGCTCATCATCATTACcctcacagGTCTGTTGTCGTTTGGAGTGAAGGAGTCAGCTGTTGTCAACAAGGTGTTTACGTGTATCAACGTCCTGGTGTTGTTGTTTATGGTGGTCTCTGGACTGGTCAAAGGAACCCTGAAGAACTGGCATCTGGACCCTGATGTCATCTTACACAACAACTCCAGCCaaaacatgaCAGAGCCCTTGCTGTCGGCGGAGAGTCTAGGAGTGGGCGGGTTCATGCCATTTGGCTTCACCGGTGTCCTATCAGGCGCTGCCACCTGTTTCTACGCCTTCGTGGGATTTGACTGCATCGCCACGACAGGTGAGGAGGTGAAGAACCCTCAGAAGGCCATTCCCATAGGCATCGTGTCGTCTCTCCTCATCTGCTTCGTGGCCTACTTCGGAGTGTCTGCTGCTCTCACCATGATGATGCCCTACTACCTCCTAGACAACAACAGTCCTCTGCCCGCAGCCTTTAAATATGTAGGCTGGGAGGGAGCCACTTACGCTGTGGCTGTAGGGTCACTGTGTGCTCTGTCCACCAGTCTCCTGGGCTCGATGTTCCCTCTCCCTCGTATAATATTTGCCATGTCTCGCGACggcctcctcttctccttcttggCCCGCATCAGTGAGAGGAAGACACCCATCATGTCCACCATGGCTGCTGGAGTCATGTCTGctatcatggcctttctgtttGACCTGAAGGACCTGGTAGATCTGATGTCTATAGGTACTCTGCTGGCCTACACCCTGGTTGCAGCCTGCGTTCTGGTACTCAGGTACCAACCAGAGCATCCCAGCTCCTTGGCCTATCAGATGGCCAGTACCGTGGAGGAGATGGAGCTAAATGATGGTATCTCCGCCCCCAGTATGGGCATCCTGCCTGGTGTGAAGGAGCACTTCAGCCTGAAGACTGTCCTGTTCCCTGACAACACTGAACCCTCAGCCCTGTCCGGCTGCACTGTCAACATCACTGTCAGCCTCATGGGCCTTCTGATCCTGGTGTTCAGTATACTAGCAGTACAGGGTGGATTTGCAGTGTGGAACATCGTAGCTCTAACCGTCATCTTCATGGTGTGTGTTCTCCTCACCTTTATAATCTGGAGACAACCAGAGAGCAAGACCAAGCTGTCCTTTAAGGTGCCCCTGTTGCCGTTCATCCCAGTGGTCAGCATGTTTGTCAACGTCTACCTAATGATGCAACTGGACAGAGGCACGTGGATACGCTTCGCTGTCTGGATGGCTATAGGGTTTGTGATCTACTTTGGCTACGGGATCCACCACAGTGCTGAGGCGGCTCTGGACCGCTCCTGTCCTGGGTCTGATGTAGAGCTGAACGGCTACATAGCCAGCCACTCACACAACATGGAGCCCATGTCTCCTGAGAAAGAGGCGTTTCTACATAATGGTCTGGAGGCCCGGGGAGAGGAGGACCGAGACCTGTAGAGTGCTAGGACCCAGCTGACAACTGCCACAGCCTGCCCTGACCACCCTACATACCACACCTTATCACGCCCCTTTGGAACTTTTGTCTGTCTGGAACCTTTATCAAACAGGATAGAACCCTCTTGGAATGAACCGTCTCATTTTGGGATGTACCATGCCGTTTTTTAACAGAGTCCTGGATTTAGACTTTAGTCTAACATCTCACTGTGGCGTATGCACATGTAGCTTCTCGCAGGTGTTTCTGGGTAGGGGAAATACAATTCTAATGCAGAAAATAAAGGAGTAGagaaaaagaaggaagagaggatagaCTGCTGTTTGCTCCTGAGGGCGTATTGTGAGCTCACAGGGGGTTTCCTACTACAGACAGGAGAACCATATCAACCCAGGGAAACCTAGAGAAACTGAGCAGACATCTTGGATCTTGTCCTCCTTCATTTTAGGGAGAGTGTGGGTTGATGTGGTGGGAGTGGggtagtgtagtgttgctgttgaggACTGGGTTTGATTGGacccactggttgaatcaacgttgtttccaacgTTTTGTTACTAATATACTCTACCTTTAGATCTGCTAAAACCATGGATGAGCTATATATGTGTGTTTCCTCTGAAACAGTGTATTTTCTAGTCTCAACTGTTACCATCTCCCCTAGCAGGATATAGGCTACCTTGTAAACTTCCGTTATCTCCCCTGTGATGTAGTGGTTGTGGCTCACCACTAGAGATCGCTGTGTATCACACAACGTCAGTAGAcctttcaaatcaaatgaaataaaatTGTATTCATCACCTGCGCCGAATACATAAGgcgtagactttaccgtgaaattattacttacaagcccttaaccaacaatgcagttcaagaaagagttcaggaaatatttacaaaatatacTTAACGTGAAAAAATTAAATATCAAAAAGTAAGACAAGAAAATAACAAAACattaatgaggctatatacaggtgatACCGAGTCaatttgggtg
>XM_036989485.1
CCTTGCAGTCAGAGGAGCTAGCTGCCTGGAATAGCTGTGCTGCCATGTgattcctcatggttctattttaGAACAGCACTGGTCTCTACACCACCAGCACTCACACTGGAGGAGTTAACAGATATACCTACTAATCAATCTACTAtgctctctgtccgtctctcttccttcctttctctctctctctctctctctctctctctccgtcctctctttCAAGTATAACTCCTGGCGGTTGGTTGTGAGTGTATGTGACCTCTCccctctgacctttgacctccgTCTGACTGTGACCCCTCAGCATGGCCCTGGAGAAGCTGCTAGGCTTTGGGAAGCAGCTGCTGCGTGTCAAGGTTGTGGACTGTAACAGTGAAGATTCCCGTCTGTCCCGATGTCTCAACACCTTCGACCTGGTGGCTTTGGGGGTGGGCAGTACTCTGGGAGCTGGGGTCTACGTCCTGGCTGGGGCCGTGGCCAGAGAGAATGCAGGTCCTGCCATTGTCCTATCCTTCTTCATCGCAGCGCTGGCCTCTGTGATGGCTGGTCTGTGTTATGCTGAGTTTGGGGCCCGCGTCCCCAAGACGGGCTCAGCCTACCTGTACAGCTACGTCACAGTGGGAGAACTCTGGGCCTTCATCACGGGATGGAACCTCATCCTTTCTTACGTTATCGgtaCCTCCAGTGTAGCACGGGCATGGAGCGCAACGTTTGATGAGTTGACAGGGAAACATATAGAGGCGTTCTGCAGACAGTACATGACCATGAAAGCACCTGGGATACTGGCAGAGTACCCTGACATGTTCGCTGTGCTCATCATCATTACcctcacagGTCTGTTGTCGTTTGGAGTGAAGGAGTCAGCTGTTGTCAACAAGGTGTTTACGTGTATCAACGTCCTGGTGTTGTTGTTTATGGTGGTCTCTGGACTGGTCAAAGGAACCCTGAAGAACTGGCATCTGGACCCTGATGTCATCTTACACAACAACTCCAGCCaaaacatgaCAGAGCCCTTGCTGTCGGCGGAGAGTCTAGGAGTGGGCGGGTTCATGCCATTTGGCTTCACCGGTGTCCTATCAGGCGCTGCCACCTGTTTCTACGCCTTCGTGGGATTTGACTGCATCGCCACGACAGGTGAGGAGGTGAAGAACCCTCAGAAGGCCATTCCCATAGGCATCGTGTCGTCTCTCCTCATCTGCTTCGTGGCCTACTTCGGAGTGTCTGCTGCTCTCACCATGATGATGCCCTACTACCTCCTAGACAACAACAGTCCTCTGCCCGCAGCCTTTAAATATGTAGGCTGGGAGGGAGCCACTTACGCTGTGGCTGTAGGGTCACTGTGTGCTCTGTCCACCAGGTACCAACCAGAGCATCCCAGCTCCTTGGCCTATCAGATGGCCAGTACCGTGGAGGAGATGGAGCTAAATGATGGTATCTCCGCCCCCAGTATGGGCATCCTGCCTGGTGTGAAGGAGCACTTCAGCCTGAAGACTGTCCTGTTCCCTGACAACACTGAACCCTCAGCCCTGTCCGGCTGCACTGTCAACATCACTGTCAGCCTCATGGGCCTTCTGATCCTGGTGTTCAGTATACTAGCAGTACAGGGTGGATTTGCAGTGTGGAACATCGTAGCTCTAACCGTCATCTTCATGGTGTGTGTTCTCCTCACCTTTATAATCTGGAGACAACCAGAGAGCAAGACCAAGCTGTCCTTTAAGGTGCCCCTGTTGCCGTTCATCCCAGTGGTCAGCATGTTTGTCAACGTCTACCTAATGATGCAACTGGACAGAGGCACGTGGATACGCTTCGCTGTCTGGATGGCTATAGGGTTTGTGATCTACTTTGGCTACGGGATCCACCACAGTGCTGAGGCGGCTCTGGACCGCTCCTGTCCTGGGTCTGATGTAGAGCTGAACGGCTACATAGCCAGCCACTCACACAACATGGAGCCCATGTCTCCTGAGAAAGAGGCGTTTCTACATAATGGTCTGGAGGCCCGGGGAGAGGAGGACCGAGACCTGTAGAGTGCTAGGACCCAGCTGACAACTGCCACAGCCTGCCCTGACCACCCTACATACCACACCTTATCACGCCCCTTTGGAACTTTTGTCTGTCTGGAACCTTTATCAAACAGGATAGAACCCTCTTGGAATGAACCGTCTCATTTTGGGATGTACCATGCCGTTTTTTAACAGAGTCCTGGATTTAGACTTTAGTCTAACATCTCACTGTGGCGTATGCACATGTAGCTTCTCGCAGGTGTTTCTGGGTAGGGGAAATACAATTCTAATGCAGAAAATAAAGGAGTAGagaaaaagaaggaagagaggatagaCTGCTGTTTGCTCCTGAGGGCGTATTGTGAGCTCACAGGGGGTTTCCTACTACAGACAGGAGAACCATATCAACCCAGGGAAACCTAGAGAAACTGAGCAGACATCTTGGATCTTGTCCTCCTTCATTTTAGGGAGAGTGTGGGTTGATGTGGTGGGAGTGGggtagtgtagtgttgctgttgaggACTGGGTTTGATTGGacccactggttgaatcaacgttgtttccaacgTTTTGTTACTAATATACTCTACCTTTAGATCTGCTAAAACCATGGATGAGCTATATATGTGTGTTTCCTCTGAAACAGTGTATTTTCTAGTCTCAACTGTTACCATCTCCCCTAGCAGGATATAGGCTACCTTGTAAACTTCCGTTATCTCCCCTGTGATGTAGTGGTTGTGGCTCACCACTAGAGATCGCTGTGTATCACACAACGTCAGTAGAcctttcaaatcaaatgaaataaaatTGTATTCATCACCTGCGCCGAATACATAAGgcgtagactttaccgtgaaattattacttacaagcccttaaccaacaatgcagttcaagaaagagttcaggaaatatttacaaaatatacTTAACGTGAAAAAATTAAATATCAAAAAGTAAGACAAGAAAATAACAAAACattaatgaggctatatacaggtgatACCGAGTCaatttgggtg

Function

NR:

description
PREDICTED: high affinity cationic amino acid transporter 1-like isoform X3

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K03294 TC.APA; basic amino acid/polyamine antiporter, APA family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989484.1 False 3259 mRNA 0.50 13 2308544 2395996
XM_036989485.1 True 3019 mRNA 0.50 11 2308544 2395996

Neighbor

gene id symbol gene type direction distance location
LOC110534809 LOC106590903 coding downstream 90572 2193384 ~ 2217972 (-)
LOC110534810 s47a1 coding downstream 136751 2127694 ~ 2171793 (-)
LOC110534823 NA coding downstream 305070 1897873 ~ 2003474 (-)
LOC110534825 nbea coding downstream 427638 1597349 ~ 1880906 (-)
LOC110533263 NA coding downstream 717907 1586498 ~ 1590637 (-)
LOC110534827 LOC106604014 coding upstream 675884 3071880 ~ 3079986 (-)
LOC110534828 NA coding upstream 696539 3092535 ~ 3093211 (-)
LOC110533269 LOC104929447 coding upstream 755326 3151322 ~ 3153275 (-)
LOC110533270 LOC106604012 coding upstream 792966 3188962 ~ 3190885 (-)
smyd4 smyd4 coding upstream 884692 3280610 ~ 3307832 (-)
G845990 NA non-coding downstream 45678 2262192 ~ 2262866 (-)
G845976 NA non-coding downstream 66868 2240197 ~ 2241676 (-)
G845975 NA non-coding downstream 72034 2236304 ~ 2236510 (-)
G845950 NA non-coding downstream 104156 2203997 ~ 2204388 (-)
G846034 NA non-coding upstream 10397 2406393 ~ 2407092 (-)
G846056 NA non-coding upstream 42704 2438700 ~ 2438997 (-)
G846055 bafb non-coding upstream 44803 2440799 ~ 2446919 (-)
G846060 NA non-coding upstream 52177 2448173 ~ 2455784 (-)
G846062 NA non-coding upstream 67963 2463959 ~ 2464195 (-)
G845814 NA other downstream 151445 2156390 ~ 2157099 (-)
G845769 NA other downstream 210185 2093235 ~ 2098359 (-)
G845683 NA other downstream 341472 1966626 ~ 1967072 (-)
G845570 NA other downstream 656551 1649940 ~ 1651993 (-)
G846125 LOC106599738 other upstream 247313 2643309 ~ 2643647 (-)
G846290 NA other upstream 352957 2748953 ~ 2753103 (-)
G846600 NA other upstream 871753 3267749 ~ 3300488 (-)

Expression


Co-expression Network