LOC110534827 (LOC106604014)


Basic Information

Item Value
gene id LOC110534827
gene name LOC106604014
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 3071880 ~ 3079986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934546.1
ATGTTTGAGGTAGATGAGAACTACACACGTGTGTCAGAGTTTGTGATCGTGGGCTTCCCGGGGCTCCATCCATCCTTCTTCCAGTTGGTGGCCTGGTTCTTCTTCTGCGTCTATGTGACCACGGTGGTGGGGAACTTCCTGCTGGTGGTGCTGTTTGCCCTGGAGCACAGCCTGCAGAAACCCATGTACATTATCATGCTCAGCCTGGCTCTGTCAGATATAGGTTTTGCCACAGTGGCCCTTCCCAATCTGATAGCTCGGTGGTGGTGGAACGACGGGAGGATCTCCTTCCATACCTGTATGTTCCAGGAACAAATGATCCACTATTTTGGAACGCTCAACTCTCTCATTATGTTGACCATGGCTATGGACCGGTACCTGGCAATATGTCACCCTCTCAGataTCCTATGTTGATGACCAACCGGACAATGAGTGGTCTAACAGTCTTTTCCTGGATATCAGCCCAAGTGGCACCTGGCATCGTCACCATAGACTTCAGCAGGAAAGTGTCATTCTGTGGTCCCAACCATATCCTCCATGCCTACTGTGATGCTATAGCACTGACTAGGCTGTCCTGTTCCAACATGGTGGCGATCAATAATAGCTCCTATGGGCTGGCCATGTTTGTCCTCCtcgtccccctctcccttatcATCTTCTCCTACATCAGCATCATCGTCACCGTGATGCGCATGGCCAACGCACAGgGCAGACGGAAAACCTTCTCTACCTGTGGTACTCAGGGATGTCTCATTCTTATCTACTACATCCCCCGCTTCATAGTCTACTCCACGCCCTACATGCCCAACCTGACAATTACCCCTGATCTCCGCGTCGTGGTCCTTCTATTCTACAGCCTGTTCCCCCCGGTGGCCAACCCGTTCATCTACTGTTTCAGGACCAAGGAGATCAAAACCATCCTGGGGCGATGGAGACAGCGTTGGGGGAATAGCCGGACTGAACCGCGTAAACCCAACACTGTGGCTGTTATCACGAGATGAGATACCACACACTGAGGGTTATTACAGGTTATAATACAAGTAGGATAGCCATCCTGGGGTGCTGGGGACAGGGCTGGAAGAACAACATTCTGCCTGTCATCAATAGATGAGGGGTTAGGTTATAACCTGTTCATTCAGAGATATAACGTGTTATTTCAGGGTAATAACCTGTTCATTCAGAGATATAACATGTTATTTCAGGGTAATAACCTGTTCATTCAGAGATATAACATGTTATTTCAGGGTAATAACCTGTTCATTCAGAGATATAACGTGTTATTTCAGGGTAATAACCTGTTCATTCAGAGATATAACATGTTATTTCAGGGTAATAACCTGTTCATTCAGAGATATAACATGTTATTTCAGGGTAATAACCTGTTCATTCAGAGATATAACATGTTATTTCAGGGTTATAACAGGTTATGAATATAACAGACAACTCAAAACTGTAGCTGTTATCACTAGacgagactcacacacacacgtggttCTGTATCATTGTATAAAAATATATGTCTGTTTCATCTTTAAAATATGACTTGCGTCGTCTACTGAGTGGTCTCGTTGCTGGATGTGATGGAGAGATGGCACTTGACATTCTGAAAATggcatttatt
>TU964319
GTTGATGACCAACCGGACAATGAGTGGTCTAACAGTCTTTTCCTGGATATCAGCCCAAGTGGCACCTGGCATCGTCACCATAGACTTCAGCAGGgGCAGACGGAAAACCTTCTCTACCTGTGGTACTCAGGGATGTCTCATTCTTATCTACTACATCCCCCGCTTCATAGTCTACTCCACGCCCTACATGCCCAACCTGACAATTACCCCTGATCTCCGCGTCGGCCTCAGCCTCATCTGTAGCCTGTTCCCCC

Function

NR:

description
olfactory receptor 10G3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934546.1 False 1622 mRNA 0.46 6 3071880 3079986
TU964319 True 254 TUCP 0.53 3 3072634 3077507

Neighbor

gene id symbol gene type direction distance location
LOC110533230 LOC105028657 coding downstream 675884 2308544 ~ 2395996 (-)
LOC110534809 LOC106590903 coding downstream 853908 2193384 ~ 2217972 (-)
LOC110534810 s47a1 coding downstream 900087 2127694 ~ 2171793 (-)
LOC110534823 NA coding downstream 1068406 1897873 ~ 2003474 (-)
LOC110534825 nbea coding downstream 1190974 1597349 ~ 1880906 (-)
LOC110534828 NA coding upstream 12549 3092535 ~ 3093211 (-)
LOC110533269 LOC104929447 coding upstream 71336 3151322 ~ 3153275 (-)
LOC110533270 LOC106604012 coding upstream 108976 3188962 ~ 3190885 (-)
smyd4 smyd4 coding upstream 200702 3280610 ~ 3307832 (-)
LOC110492805 rtn4rl1 coding upstream 338478 3418464 ~ 3577074 (-)
G846457 NA non-coding downstream 8719 3058347 ~ 3063161 (-)
G846472 NA non-coding downstream 46948 3024339 ~ 3024932 (-)
G846465 NA non-coding downstream 56523 3012230 ~ 3015357 (-)
G846461 NA non-coding downstream 62215 3007676 ~ 3009665 (-)
G846446 NA non-coding downstream 82790 2988647 ~ 2989090 (-)
G846506 NA non-coding upstream 3229 3083215 ~ 3083800 (-)
G846547 NA non-coding upstream 83328 3163314 ~ 3163551 (-)
G846567 NA non-coding upstream 183203 3263189 ~ 3263538 (-)
G846600 NA non-coding upstream 187763 3267749 ~ 3300488 (-)
G846614 NA non-coding upstream 231417 3311403 ~ 3311608 (-)
G846290 NA other downstream 318777 2748953 ~ 2753103 (-)
G846125 LOC106599738 other downstream 428233 2643309 ~ 2643647 (-)
G845814 NA other downstream 914781 2156390 ~ 2157099 (-)
G845769 NA other downstream 973521 2093235 ~ 2098359 (-)
G845683 NA other downstream 1104808 1966626 ~ 1967072 (-)
G847740 NA other upstream 1336620 4416606 ~ 4419950 (-)
G847774 NA other upstream 1487826 4567812 ~ 4569190 (-)

Expression


Co-expression Network