LOC110533270 (LOC106604012)


Basic Information

Item Value
gene id LOC110533270
gene name LOC106604012
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 3188962 ~ 3190885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617354.2
aataagctGCTGTCCACACACCCTAACCCGCAGCCTCTTCCTCTTCCACCATCTCACGTCGCAGCTCTGCCAACATTCTACTGTACTCATACTGTCACCTCACTGCGCGTCAACtccggagggacagagagaccggACTCATTTTTTtgggacgagagagagaaggaatgcgAGAATGAAGAAGAATAAATACTATTGAGAGTTGTTTTTCTTCTCAAGCAAACTGACCGACGAAACTACTTGACCTGTGgcctcagagagaggggaagtgtgTCCTGTCTCCCACTTCGAAACGACGTTGTGCAAGACGTCTAACTGAcctattgtaaaaatgtattattttggtgACGTTTTACGAGGTGTTCTTTCTTTTCTGAAAGGCCGGTGTTTTTGTTTATTAGCCGAGGCCGTGTTCGTGTGCttgttgttttcttctgtcaaagCAGAGGAAGAGTGTCCGTTATCCTGTATCTGTGTCAGAGACTCCGGGACGGTGACCTGCCGGGATACCGAACACACTGAGTTACCGGGTGACATACCTGCGTGGGCGACCACGTTAATACTCAGGGGGAACAACATCTCAACGTTACCGGGAGGAGCGTTCTCCACGAATAACGGGACGGAACTCGAACTAACGACCCTCTCACTGTCACATAACGGGATCATGGTGATCGAGGCTGACGCTTTCACGGGACTCCCCAGGTTGAATTTACTGGATTTGAGCCACAACCCGTTGGTGTATATTTCGGACCGGGCGTTTCACGGTCTGCGGGAGCTCCGTTCTCTTTACCTGAACGACTCGCTCCTTGCTCCAGCCGTGGCGCAGCTCTCCAACGCGCTGCAGGGCACCGAAACGTTACGCAACCTCCACCGGCTGGAGCTGTCAGGAAACCGATTGAAAACCATACCCATCACACGGTTGGACGCGTTCAACCTCCACACTTTAGTTCTCACCAACAATTCCATCGAGAACATTGGTAAAGATAACATATCTAGTTTGTACCGTCACAAGAGAGTGCGCATTTATTTGTCACTAAATCCTTTCAGGTGTAACTGTGAACTCGAGTCGTTCTACCTCTGGTTAAAGAACTCTTCCCAGTGTGTGGACGCTGCGCGCCTCCTGTGCGCCGAGCCTGATGCCAAAAAGGGGATTCCACTGGAGCGGTTACGCGGTGAGGACGTGGATTGTCTCAATGAGAACTTGGAGGCGGTGTCCTACGTGTTCCTAGGGATAGTCATGGCGCTGATCGGTATTGTATTCCTCATGGTGCTCTATCTAAACCGGAGAGGCATCAAACGGTGGCTCAACAACATCCGTGATGCGTGCCGCGACCAGATGGAAGTGTACCATTACCGGTACGAGCAGGACTCCGATCCCCGGTTGGCTAACGTCGCCGTTTAATGTTTAACGTTCACTCCCTCAACCTATGCCATTATCAATCGTTGTTTTATGTACAGAGTAAACTGTTTCATGAACGGAAGAGCAATTAGTATCCGTTTTGTTCTCGACTGATATCAACTGTAGTTGTTTCTAATATGTATGCCAATGATTTGGAAAGCAACAGACTTCATTATCCAAGAGGGACAAATACAATGTGCTTTATTGTAAATATCTGTGGAATTATACATTTCTGTAAATATACAATGTACAAcaccaaaaaaaataaaacatgcttATCTTCCATCATGGAGACGTGAGAACACATAAGACTTGTTAAAATATAGATGTACAGTAGGACGGTTTAGTTGTGACTAGTTTCAACAACAGAATAAATAGTTTGAGTTCCTCCTACAGATTATTCTAAACGACTGTATCAGTATGTAAGTACATGTATAAACTGTAATTACAGTAGAAAATGTATCTATTTAATAAAACGATTGAGAATTATTAATGGGATTAATGTATGTtgagcagccaggtcac

Function

NR:

description
trophoblast glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617354.2 True 1924 mRNA 0.46 1 3188962 3190885

Neighbor

gene id symbol gene type direction distance location
LOC110533269 LOC104929447 coding downstream 35687 3151322 ~ 3153275 (-)
LOC110534828 NA coding downstream 95751 3092535 ~ 3093211 (-)
LOC110534827 LOC106604014 coding downstream 108976 3071880 ~ 3079986 (-)
LOC110533230 LOC105028657 coding downstream 792966 2308544 ~ 2395996 (-)
LOC110534809 LOC106590903 coding downstream 970990 2193384 ~ 2217972 (-)
smyd4 smyd4 coding upstream 89803 3280610 ~ 3307832 (-)
LOC110492805 rtn4rl1 coding upstream 227579 3418464 ~ 3577074 (-)
LOC110491256 LOC106603993 coding upstream 442512 3633397 ~ 3676854 (-)
LOC110491262 NA coding upstream 725761 3916646 ~ 3923466 (-)
LOC110492807 coro6 coding upstream 739313 3930198 ~ 3967363 (-)
G846547 NA non-coding downstream 25411 3163314 ~ 3163551 (-)
G846495 NA non-coding downstream 89286 3052178 ~ 3099676 (-)
G846506 NA non-coding downstream 105162 3083215 ~ 3083800 (-)
G846457 NA non-coding downstream 125801 3058347 ~ 3063161 (-)
G846472 NA non-coding downstream 164030 3024339 ~ 3024932 (-)
G846567 NA non-coding upstream 72304 3263189 ~ 3263538 (-)
G846600 NA non-coding upstream 76864 3267749 ~ 3300488 (-)
G846614 NA non-coding upstream 120518 3311403 ~ 3311608 (-)
G846621 NA non-coding upstream 130078 3320963 ~ 3321194 (-)
G846625 NA non-coding upstream 149342 3340227 ~ 3340454 (-)
G846290 NA other downstream 435859 2748953 ~ 2753103 (-)
G846125 LOC106599738 other downstream 545315 2643309 ~ 2643647 (-)
G845814 NA other downstream 1031863 2156390 ~ 2157099 (-)
G847740 NA other upstream 1225721 4416606 ~ 4419950 (-)
G847774 NA other upstream 1376927 4567812 ~ 4569190 (-)
G847843 NA other upstream 1545644 4736529 ~ 4741588 (-)

Expression


Co-expression Network