smyd4 (smyd4)


Basic Information

Item Value
gene id smyd4
gene name smyd4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 3280610 ~ 3307832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989490.1
AGCTTTCAATTTCGGTGACGTCAACACATCGCGACTTCCGGATTCTCGATGACTGCCGTTAGAAGAGAAACTGCGCGCTGATTTTGAGCCTCAACTACCAATTTACATTGAGATCTAGCAGTCTGTATAACCAAAATGGATACGCAGTTTCTGAAAATACCACCGAAGCGCACATGAGTTTCTCTCCAACTACAGTGTAACGTTAGTTTCACATAATGGACCTGCCGTGTGTCGAGTGGCAAAAGCATGTGGAACAGAAGTGGAGCCGACTAACTCTTGATGAGAAGAAATGCTTCTCGTCCCTGTTGGACATAGATGAGGTCTTTGATTTTGGCCTGTCTCAAGTAAACCAAGAGGACGTGGACTTTCTGTCGGGCATTTCCAAGGACGATCCTGTCCAGAAGGACCTGGAGCGAGCTGCCAGATGCCGGAAGGAGGGCAACTGCAGCTTTAAAACCAGGGACTACACTGCGGCTGTCCTGCACTactcacagGGTGTGTGTCATGCGTCTCTGAGCTCGGAGCAGCTCTCTCTGTGCTATGCCAACCGTTCTGCAGCGCTATTCCACCTCCAGCGCTACAGGGAGTGCCTCGAGGACATCGACAGAGCCCTGAACCATGGCTACCCAAGTCACCTGAAGCACAAACTACAGGACAGACAGGCACAGTGCCTCAACCACTTCCCCAACGGGACAGAGGGGATAACCACCGCCAAGCAGGGGGCGGGGCACCAGGCAGAGGGGGTGTGTAGCAGGACCAACTCAACAAAGCCCAACCCAAAGTCCCCAAACTCCCAGCAGCAGAATGGGAGTGCCTCCGTGTCGTGTCTCTCACCTGGCTTGTCCGTGTGCTTCAGCCCTGAAAAAGGGCGACACCTGGTGGCCACCAAGGGAATCGCGGCCGGAGAGGTGATATTGGAGGACAGGGCTTACAGCTGTGTGCTTATAccaggggtggggggagggagaagagaggagactgaGGAAGCAGGAAGAGTGTTTGGGACCGAGGTGAGGTACTGTCATCAGTGTTTGAGGGAGACGGTGAGCCCTGTGCCATGTGAGGGGTGCAGCTACGCCCGCTACTGCTCAGAGGGGTGTCGGAGGGGCGCGTGGGAGTGGCATCATCGCTGGGAGTGTCCAATCGGAGCCGAGCTGAGTACTGCGGGAGTGATGTCACAGCTGGCGCTGAGGGTGGCGTTAAAAGCGGGGGTGAAGGAGGTACTGAAGGCACGGGAACCAATCAGAGACGCAGATAATGATTCTAAACTAATCAGAGAGAAGATTAGCGCCAATAATTCCAGTTCTAAGCCAATCACAGAAAAGATCCGCCCAAAGATGAAGAATTCTGGGTCCAGTGAAGCCACCTCAACTGAGCCGGAGGTCAACGACCCCTCTGCTTATTACCATGGTGATTCCTACCTGAGCGTCTACCACCTGCTGCCTCACCTGAATGGCCACGCCCCCAGCCTGTGCTTCTTGTGCTCTGTCACCATAGCAACGCTCTACCTGCGGCTGCGCCAGGCGGGACCTCCACCTGTGtcctgggagaggggaggagccTCAGAAAGCATGACGTGCAGTAACCAATCGCGGGCCCCCGAGGATGGAGAGGGCTGGGCTCCGGAGCTAAGCCTGCTGGGAAGTGTAGCTCTGAGGCACATGCTGCAGCTGAGATGTAATGCCCAGGCAGTGAGCCTGCTCAGAGACACAGGTGATTTTACTGCGGTGCAGTCCACCCAGGAAGTGCGCATTGCCACGGCAATATTCCCCACACTGAGTATCCTAAACCACTCCTGCTGCCCCAACACAAGCCTCAACTTCAGGACCTCTCACTTGGTCTCACCTCAACCAGACCGAGGCTCTACTGATGTTCTGGTTTCCACTGAGCCTGTTTCTACTGGTCCTGAGGCCTGTTCTGCTCCTGTCTCCGTCTCAGCTGGAGTAGCTGTCTCTATCAGAGCATCCAGAGACATCTGTCCTGGACAGGAAGTCCTCCACTGTTACGgTCCTCACAGCAGCAGGATGGTGTTGTGTGAGCGTCGGCGACTCCTACAGGAGCAGTACCACTTCCTGTGTCTCTGTCAGGCCTGCAGTCTGGAGCAGGGGGAGGGGCCAGAGGGCGGAGGGGCAGGGCCAGAAACACATCTGCAGTGTGGGAAGTGCGAGGGACCTGTAAAGcagtGCAGCGTGGACAGTGCAGGGTGGTTCGTGTGTGTGCGGTTGTCTTGCGGTCATCGTGTGTCACGCTCTGAAATGGACCTCAGACTGCAGGAGGTCAGAGTTCAGCTGGAGCAGGCAGTGGACctcctggagacagacagaccagACCAGTCTGTCATGTTGTTACAGAGAGCAGTGTCTCAGGCTGGTGTCTTCCTGAAAGAGACTCATTCTCTACAGGGACAACTGGCTGATACCATGGCCAGAGCATATTCCACTATGGgtGAGTGGCGAGGGGCAGCGTGCCAGTTGGAGCGTAGTGTTTTAGCCATCCGTTCCCAGTACGGACAGGACAGTATTGAACTGGGACGTCAGCTCTTCAAACTGGCACAGCTACACTTCAATGGagGTTccccaggtccagctctctctgtGATCTCCAGGGCCAGAAGACTCCTGTCCCTCCACTGTGGACCCCACTGTCCTGAGGTACAGGAACTACAGTCCATGGAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAAGACAggcagggagtgagtgagtgattgattGAGTGTTGTAGTACTTGAGACCGGTCTCTTTGAGTCTCTCAATCTTGTCTCTGTGTAGGACACATTTGTCCTctgtcttgactcggtctcagaCTGTGAGGACTCTTCATTTCTTCCTGAGACCTGCCAAGACcagcagagtaaaaaaaaaacattatcagCCTCCAATCAATAAGTGAATAAAACCGCTTGGCCAGGACAAATATATCCACTCCTTCGTTGAAACATCTAATACCTGAACAGCCTTTAAATCTGTTCTAGACACAGTGGTGAACCTGGTGAACCTGGGCCCTTTGCTGCAGTCCATGATCAGAAGTGCCCTCTTTAGCCTCCTGGGTGGAATGTTTTTCATATTGTTCCTAATTAATGaagtttataaaaaataaatgaaattccGGTGTTT
>XM_036989491.1
AGCTTTCAATTTCGGTGACGTCAACACATCGCGACTTCCGGATTCTCGATGACTGCCGTTAGAAGAGAAACTGCGCGCTGATTTTGAGCCTCAACTACCAATTTACATTGAGATCTAGCAGTCTGTATAACCAAAATGGATACGCAGTTTCTGAAAATACCACCGAAGCGCACATGAGTTTCTCTCCAACTACAGTGTAACGTTAGTTTCACATAATGGACCTGCCGTGTGTCGAGTGGCAAAAGCATGTGGAACAGAAGTGGAGCCGACTAACTCTTGATGAGAAGAAATGCTTCTCGTCCCTGTTGGACATAGATGAGGTCTTTGATTTTGGCCTGTCTCAAGTAAACCAAGAGGACGTGGACTTTCTGTCGGGCATTTCCAAGGACGATCCTGTCCAGAAGGACCTGGAGCGAGCTGCCAGATGCCGGAAGGAGGGCAACTGCAGCTTTAAAACCAGGGACTACACTGCGGCTGTCCTGCACTactcacagGGTGTGTGTCATGCGTCTCTGAGCTCGGAGCAGCTCTCTCTGTGCTATGCCAACCGTTCTGCAGCGCTATTCCACCTCCAGCGCTACAGGGAGTGCCTCGAGGACATCGACAGAGCCCTGAACCATGGCTACCCAAGTCACCTGAAGCACAAACTACAGGACAGACAGGCACAGTGCCTCAACCACTTCCCCAACGGGACAGAGGGGATAACCACCGCCAAGCAGGGGGCGGGGCACCAGGCAGAGGGGGTGTGTAGCAGGACCAACTCAACAAAGCCCAACCCAAAGTCCCCAAACTCCCAGCAGCAGAATGGGAGTGCCTCCGTGTCGTGTCTCTCACCTGGCTTGTCCGTGTGCTTCAGCCCTGAAAAAGGGCGACACCTGGTGGCCACCAAGGGAATCGCGGCCGGAGAGGTGATATTGGAGGACAGGGCTTACAGCTGTGTGCTTATAccaggggtggggggagggagaagagaggagactgaGGAAGCAGGAAGAGTGTTTGGGACCGAGGTGAGGTACTGTCATCAGTGTTTGAGGGAGACGGTGAGCCCTGTGCCATGTGAGGGGTGCAGCTACGCCCGCTACTGCTCAGAGGGGTGTCGGAGGGGCGCGTGGGAGTGGCATCATCGCTGGGAGTGTCCAATCGGAGCCGAGCTGAGTACTGCGGGAGTGATGTCACAGCTGGCGCTGAGGGTGGCGTTAAAAGCGGGGGTGAAGGAGGTACTGAAGGCACGGGAACCAATCAGAGACGCAGATAATGATTCTAAACTAATCAGAGAGAAGATTAGCGCCAATAATTCCAGTTCTAAGCCAATCACAGAAAAGATCCGCCCAAAGATGAAGAATTCTGGGTCCAGTGAAGCCACCTCAACTGAGCCGGAGGTCAACGACCCCTCTGCTTATTACCATGGTGATTCCTACCTGAGCGTCTACCACCTGCTGCCTCACCTGAATGGCCACGCCCCCAGCCTGTGCTTCTTGTGCTCTGTCACCATAGCAACGCTCTACCTGCGGCTGCGCCAGGCGGGACCTCCACCTGTGtcctgggagaggggaggagccTCAGAAAGCATGACGTGCAGTAACCAATCGCGGGCCCCCGAGGATGGAGAGGGCTGGGCTCCGGAGCTAAGCCTGCTGGGAAGTGTAGCTCTGAGGCACATGCTGCAGCTGAGATGTAATGCCCAGGCAGTGAGCCTGCTCAGAGACACAGGTGATTTTACTGCGGTGCAGTCCACCCAGGAAGTGCGCATTGCCACGGCAATATTCCCCACACTGAGTATCCTAAACCACTCCTGCTGCCCCAACACAAGCCTCAACTTCAGGACCTCTCACTTGGTCTCACCTCAACCAGACCGAGGCTCTACTGATGTTCTGGTTTCCACTGAGCCTGTTTCTACTGGTCCTGAGGCCTGTTCTGCTCCTGTCTCCGTCTCAGCTGGAGTAGCTGTCTCTATCAGAGCATCCAGAGACATCTGTCCTGGACAGGAAGTCCTCCACTGTTACGgTCCTCACAGCAGCAGGATGGTGTTGTGTGAGCGTCGGCGACTCCTACAGGAGCAGTACCACTTCCTGTGTCTCTGTCAGGCCTGCAGTCTGGAGCAGGGGGAGGGGCCAGAGGGCGGAGGGGCAGGGCCAGAAACACATCTGCAGTGTGGGAAGTGCGAGGGACCTGTAAAGtGCAGCGTGGACAGTGCAGGGTGGTTCGTGTGTGTGCGGTTGTCTTGCGGTCATCGTGTGTCACGCTCTGAAATGGACCTCAGACTGCAGGAGGTCAGAGTTCAGCTGGAGCAGGCAGTGGACctcctggagacagacagaccagACCAGTCTGTCATGTTGTTACAGAGAGCAGTGTCTCAGGCTGGTGTCTTCCTGAAAGAGACTCATTCTCTACAGGGACAACTGGCTGATACCATGGCCAGAGCATATTCCACTATGGgtGAGTGGCGAGGGGCAGCGTGCCAGTTGGAGCGTAGTGTTTTAGCCATCCGTTCCCAGTACGGACAGGACAGTATTGAACTGGGACGTCAGCTCTTCAAACTGGCACAGCTACACTTCAATGGagGTTccccaggtccagctctctctgtGATCTCCAGGGCCAGAAGACTCCTGTCCCTCCACTGTGGACCCCACTGTCCTGAGGTACAGGAACTACAGTCCATGGAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAAGACAggcagggagtgagtgagtgattgattGAGTGTTGTAGTACTTGAGACCGGTCTCTTTGAGTCTCTCAATCTTGTCTCTGTGTAGGACACATTTGTCCTctgtcttgactcggtctcagaCTGTGAGGACTCTTCATTTCTTCCTGAGACCTGCCAAGACcagcagagtaaaaaaaaaacattatcagCCTCCAATCAATAAGTGAATAAAACCGCTTGGCCAGGACAAATATATCCACTCCTTCGTTGAAACATCTAATACCTGAACAGCCTTTAAATCTGTTCTAGACACAGTGGTGAACCTGGTGAACCTGGGCCCTTTGCTGCAGTCCATGATCAGAAGTGCCCTCTTTAGCCTCCTGGGTGGAATGTTTTTCATATTGTTCCTAATTAATGaagtttataaaaaataaatgaaattccGGTGTTT
>TU964450
AGACCAGTCTGTCATGTTGTTACAGAGAGCAGTGTCTCAGGCTGGTGTCTTCCTGAAAGAGACTCATTCTCTACAGGGACAACTGGCTGATACCATGGCCAGAGCATATTCCACTATGGgtGAGTGGCGAGGGGCAGCGTGCCAGTTGGAGCGTAGTGTTTTAGCCATCCGTTCCCAGTACGGACAGGACAGTATTGAACTGGGACGTCAGCTCTTCAAACTGGCACAGCTACACTTCAATGGagGTTccccaggtccagctctctctgtGATCTCCAGGGCCAGAAGACTCCTGTCCCTCCACTGTGGACCCCACTGTCCTGAGACACAGTGGTGAACCTGGTGAACCTGGGCCCTTTGCTGCAGTCCATGATCAGAAGTGCCCTCTTTAGCCTCCTGGGTGGAATGTTTTTCATATTGTTCCTAATTAATGaagtttataaaaaataaatgaaattccGGTGTTTATATgtcttgttttttgtttgttaattTTTGTAATTATATTTCCGTTTTCTGTGATGAATATAAGGTGTAATATCGGG

Function

symbol description
smyd4 Predicted to enable metal ion binding activity. Acts upstream of or within heart looping and negative regulation of histone deacetylase activity. Is expressed in blood vessel; cardiac ventricle; heart; heart tube; and polster. Used to study congenital heart disease. Orthologous to human SMYD4 (SET and MYND domain containing 4).

NR:

description
PREDICTED: SET and MYND domain-containing protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989490.1 False 3228 mRNA 0.54 10 3280688 3307832
XM_036989491.1 False 3225 mRNA 0.54 10 3280688 3307832
TU964450 True 545 TUCP 0.47 4 3280610 3281873
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Neighbor

gene id symbol gene type direction distance location
LOC110533270 LOC106604012 coding downstream 89803 3188962 ~ 3190885 (-)
LOC110533269 LOC104929447 coding downstream 127413 3151322 ~ 3153275 (-)
LOC110534828 NA coding downstream 187477 3092535 ~ 3093211 (-)
LOC110534827 LOC106604014 coding downstream 200702 3071880 ~ 3079986 (-)
LOC110533230 LOC105028657 coding downstream 884692 2308544 ~ 2395996 (-)
LOC110492805 rtn4rl1 coding upstream 110632 3418464 ~ 3577074 (-)
LOC110491256 LOC106603993 coding upstream 325565 3633397 ~ 3676854 (-)
LOC110491262 NA coding upstream 608814 3916646 ~ 3923466 (-)
LOC110492807 coro6 coding upstream 622366 3930198 ~ 3967363 (-)
LOC110491261 LOC106603981 coding upstream 660378 3968210 ~ 3995755 (-)
G846600 NA non-coding downstream 11393 3267749 ~ 3300488 (-)
G846567 NA non-coding downstream 17150 3263189 ~ 3263538 (-)
G846547 NA non-coding downstream 117137 3163314 ~ 3163551 (-)
G846495 NA non-coding downstream 181012 3052178 ~ 3099676 (-)
G846506 NA non-coding downstream 196888 3083215 ~ 3083800 (-)
G846614 NA non-coding upstream 3571 3311403 ~ 3311608 (-)
G846621 NA non-coding upstream 13131 3320963 ~ 3321194 (-)
G846625 NA non-coding upstream 32395 3340227 ~ 3340454 (-)
G846931 NA non-coding upstream 36006 3343838 ~ 3432780 (-)
G846290 NA other downstream 527585 2748953 ~ 2753103 (-)
G846125 LOC106599738 other downstream 637041 2643309 ~ 2643647 (-)
G845814 NA other downstream 1123589 2156390 ~ 2157099 (-)
G847740 NA other upstream 1108774 4416606 ~ 4419950 (-)
G847774 NA other upstream 1259980 4567812 ~ 4569190 (-)
G847843 NA other upstream 1428697 4736529 ~ 4741588 (-)
G847861 NA other upstream 1503116 4810948 ~ 4812182 (-)
G848149 NA other upstream 1834045 5141877 ~ 5142471 (-)

Expression

smyd4(smyd4) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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smyd4(smyd4) Expression in each Bioproject

Bar chart with 21 bars.
smyd4(smyd4) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network