LOC110491261 (LOC106603981)


Basic Information

Item Value
gene id LOC110491261
gene name LOC106603981
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 3968210 ~ 3995755 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989510.1
AATGTGCTATTGGTTGATAAGGGCGTAGGCAGTAGTTAAGAAACGGATAGGAGCACTGTGTGGGTGTCCTTGGAAACAGATATTGACTGATTGGAACACATTTAGAAGACAGATTGATGATGTCATCACTCCTGGCCGtagtttctctcctcctcttgcaGCCAGGGGTGCAGGGGTTCCTGGCATTCCTCTCAGGCAGCTCCATGAACCACATGGAGATCACTAAGGAAGCCATCTTACAGACCACGGCACAGGTGTGCAAGCAACTGGCCTCTGTTGAAGGAAGAGACTTCACTCTGCCGcccGGACCCCTGACTGCAGAGTCTCTGGCTCTAACCTGCTCCTCATCGGGGTCTGCTAAGAGTTTCCAGAGTGCCATATCAGACGTCACCCGGAGAAATGCCGGAGTTGACGTACGTCACGTGTTCAATGAAGAGTACCACTTTGATAGGGAGAGGTTCGTGGAGGGGCGGAAACTCATCACAGATGGCATGAGCTCTGTCAAAGACAGCATCAAGCAAGGGAACTTTGAGGCAGCAAGACAGAAGCTGGGAGACATTTTACACACCTTACAGGACTTCTACAGTCACAGTAACTGGATAGAACTGGGCAACAGATTTCCCCATTCTAATCTCATCAGATCAGACGTGTCAGACATCGGCCCTGTTGCAGATAAGGACACTCCCACATGTCGGAGCTGTGTCGGTAAAGACTGCCAGAACAACATCCTAGAAAACATAATCAGAGACAAGAAGCTGACCTCGGGATATTTTGGCCTTGGACCTCTTTCTTCCACCAAACCAAAAGGGAAATGCAGCCATGGGGGATCATTGGACCAGACAAGCAGGCAGGAGCCTACAGGTGGGATCAACAAGGACTCGCTTGAGTCCAGCCATGGCAACTGGCACACTGCAGCTGCAGAGGTGGCCGTGGCTGCAACCAGTCAGCTGCTGGAGGACATCAGAGGGGCTGCCGGGGACAGAGACTTCCTACGgaTGATGGGGATCTCTAAGAATGGATCTAGAGCTCTGTGTTTTGTGATCGACACCACCGGCAGCATGTCGGACGACATTGCAGCAGTAAGGGAGACGACATCGTTCATCATTGACAGCAAGAGAGGAACGCCAGACGAGCCCTCAGTCTACATCTTGGTCCCCTTCAATGACCCAGACTTTGGGCCCCTGATGCGGACCACAGACCCAAACGTCTTTAAGGCCCAGATCAATGCACTGAATGCTGATGGAGGAGGGGATTTCCCAGAGATGAGTCTATCAGGACTTCAGTTGGCTTTAACTGGTGCACCCCCCTCTTCAGAGATCTTCCTTTTCACTGATGCCCCTGCAAAAGACTCGAATCTAATGGGCACGGTGATCGCTCTAATAGAACGCACTAAGTCAGTGGTGACCTTCTTCCTAACTGGCTCCTTGGGGCTCCGTCGTAGGAGGGGTAGTGACCAGGGCCAAGGACAGGTCCAGCACAGTCGGATGGCAGTGTCAGACTCCCAGCTCTACAGGGAGCTGGCCCAGTCCTCAGGTGGCCAAGCCATACAGGTCACCAAGACAGAACTGCCCAAGGCCACCAGCATCATTGTGGAATCCTCCAGCTCTTCATTGGTGACCATTCTACAGGCTGTGCGGAGTACAGGAAGGGCTGATAATTTCTCCTTCACTGTAGATGAGTCTGTGAGAAATCTGACTGCTTATGTCACAGGAAGCTCCCTCTCCTTCACGCTCACCAGCCCCTCAGGTGTGTCCCAGAGTAGTGGGGAGGTAAATGGGTCTCTGGCAACCATACAAACCGTGGGGAACTTCCTAACACTGGGGCTGGACAGCCAAGCGGGATTATGGGAAATCCGTGTTTCATCAACTGTGCCCTACTCACTGAAGGTCGTAGGTCAGAGCGCCATCGACTTCCTGTTTGACTTTGTGGAGGTGTCCCAGGGACCTCATCCAGCCTTCGCTGTTTTAGAGTCCCGTCCTCAAGCTGGTGGTAATGCCACCCTGCTGGTGTCAGTGACGGGGAGTGAATCTGTGAGTCTGACAGAGGTGGCGCTGGTTGAGGCCTCGGGGTCAGGAGAGGTCAATGGAACCTTGGAATCAGTCGGCGGCGGGGACTTCCTGGTTACCATGGACAGAATCCCGGCGGGGGAATTTGTTGTGCgtctgagaggagagaacagcgcCACCACTAGGGCATTACCAGACAGCTTCCAGAGACAGTCTTCCACCCGCCTCAGAGCCTCCACTGTTATGGTGATGGCTGAGGCAGAAAGTGACCTGGAGCCTGGAACACCCTTTTCAGTTCTGTTCACTGTGACAACCAACGGGACAGGCGGATCCTTCACCATCCGGGCCACAAACGACCGGGggttcccctcctcttcccctacaGACCTGACGCTAGTGACCGGGGTCAGTGCCAATGGTACAGTGATTCTCACGGCGCCCGCCAACACCGCGTCGGGCACGGACGTCACCCTGACTATCGAGGCTGAGTCTCCCGGGGCCACCGACACTAACTATGCTGTTCTGCGCCTCACAGTCGTTTCACCGGTGACAGATGTCAGCCGTCCGGTGTGCGATGTGGTCAGCGTAACAGCTAATTGTTCTGACGACTGCAGCCTTTCCGTGTGGGAGCTCTCTGCCAACCTGACGGACGGCAATGGGACGGGCATCGAGCACGTCACTCTGCGCCAGGGCAACGGAACCCTCAACACCACCACGGTGAAGGGCGCTGGGAATTGGACCGTGACTCTGGCAGCCTACAGCGCCTCCTGCTGTTCCCCGGAGGTAGAGCTGGTGGCGGTGGACGGCGCGGGGAATGTGGGAACCTGTTTCAGGTCCATCAGAGTCACAGTGGATACCACTGTCCAGCCACCAGTCACCAAGGCTACCACTAAGAACAGCATCACCGTGACTACAGCTAAAGTTGCCACCACCGCCGCCACCACCGCCGCCACCGCCGCCGCCACCGCCACCGCCGCCGCCGCCGCCGCGAGCAGCAGccatcctctgtccctctcctcgtaTCTCTGTTCCATCATGTTGGTCTCTGTCACACTCGTTTTGAGCCTCTAGTGTCACGGTGTGACTTCTGGTCTTGAAAGATGTTTAATCATATTCAATAGATTCTCTGTTATAATACTGTCTGGTAACTTTCCATTATTGTGTCAATTCTAATaataaatgccatttagcaga
>XM_036989508.1
AAAGAGACCCATCATCTGTGTGAATCATATCTCTTCATAGGAGACATAGTTCTGATCCCGTGGCATAACAAGATTGATGATGTCATCACTCCTGGCCGtagtttctctcctcctcttgcaGCCAGGGGTGCAGGGGTTCCTGGCATTCCTCTCAGGCAGCTCCATGAACCACATGGAGATCACTAAGGAAGCCATCTTACAGACCACGGCACAGGTGTGCAAGCAACTGGCCTCTGTTGAAGGAAGAGACTTCACTCTGCCGcccGGACCCCTGACTGCAGAGTCTCTGGCTCTAACCTGCTCCTCATCGGGGTCTGCTAAGAGTTTCCAGAGTGCCATATCAGACGTCACCCGGAGAAATGCCGGAGTTGACGTACGTCACGTGTTCAATGAAGAGTACCACTTTGATAGGGAGAGGTTCGTGGAGGGGCGGAAACTCATCACAGATGGCATGAGCTCTGTCAAAGACAGCATCAAGCAAGGGAACTTTGAGGCAGCAAGACAGAAGCTGGGAGACATTTTACACACCTTACAGGACTTCTACAGTCACAGTAACTGGATAGAACTGGGCAACAGATTTCCCCATTCTAATCTCATCAGATCAGACGTGTCAGACATCGGCCCTGTTGCAGATAAGGACACTCCCACATGTCGGAGCTGTGTCGGTAAAGACTGCCAGAACAACATCCTAGAAAACATAATCAGAGACAAGAAGCTGACCTCGGGATATTTTGGCCTTGGACCTCTTTCTTCCACCAAACCAAAAGGGAAATGCAGCCATGGGGGATCATTGGACCAGACAAGCAGGCAGGAGCCTACAGGTGGGATCAACAAGGACTCGCTTGAGTCCAGCCATGGCAACTGGCACACTGCAGCTGCAGAGGTGGCCGTGGCTGCAACCAGTCAGCTGCTGGAGGACATCAGAGGGGCTGCCGGGGACAGAGACTTCCTACGgaTGATGGGGATCTCTAAGAATGGATCTAGAGCTCTGTGTTTTGTGATCGACACCACCGGCAGCATGTCGGACGACATTGCAGCAGTAAGGGAGACGACATCGTTCATCATTGACAGCAAGAGAGGAACGCCAGACGAGCCCTCAGTCTACATCTTGGTCCCCTTCAATGACCCAGACTTTGGGCCCCTGATGCGGACCACAGACCCAAACGTCTTTAAGGCCCAGATCAATGCACTGAATGCTGATGGAGGAGGGGATTTCCCAGAGATGAGTCTATCAGGACTTCAGTTGGCTTTAACTGGTGCACCCCCCTCTTCAGAGATCTTCCTTTTCACTGATGCCCCTGCAAAAGACTCGAATCTAATGGGCACGGTGATCGCTCTAATAGAACGCACTAAGTCAGTGGTGACCTTCTTCCTAACTGGCTCCTTGGGGCTCCGTCGTAGGAGGGGTAGTGACCAGGGCCAAGGACAGGTCCAGCACAGTCGGATGGCAGTGTCAGACTCCCAGCTCTACAGGGAGCTGGCCCAGTCCTCAGGTGGCCAAGCCATACAGGTCACCAAGACAGAACTGCCCAAGGCCACCAGCATCATTGTGGAATCCTCCAGCTCTTCATTGGTGACCATTCTACAGGCTGTGCGGAGTACAGGAAGGGCTGATAATTTCTCCTTCACTGTAGATGAGTCTGTGAGAAATCTGACTGCTTATGTCACAGGAAGCTCCCTCTCCTTCACGCTCACCAGCCCCTCAGGTGTGTCCCAGAGTAGTGGGGAGGTAAATGGGTCTCTGGCAACCATACAAACCGTGGGGAACTTCCTAACACTGGGGCTGGACAGCCAAGCGGGATTATGGGAAATCCGTGTTTCATCAACTGTGCCCTACTCACTGAAGGTCGTAGGTCAGAGCGCCATCGACTTCCTGTTTGACTTTGTGGAGGTGTCCCAGGGACCTCATCCAGCCTTCGCTGTTTTAGAGTCCCGTCCTCAAGCTGGTGGTAATGCCACCCTGCTGGTGTCAGTGACGGGGAGTGAATCTGTGAGTCTGACAGAGGTGGCGCTGGTTGAGGCCTCGGGGTCAGGAGAGGTCAATGGAACCTTGGAATCAGTCGGCGGCGGGGACTTCCTGGTTACCATGGACAGAATCCCGGCGGGGGAATTTGTTGTGCgtctgagaggagagaacagcgcCACCACTAGGGCATTACCAGACAGCTTCCAGAGACAGTCTTCCACCCGCCTCAGAGCCTCCACTGTTATGGTGATGGCTGAGGCAGAAAGTGACCTGGAGCCTGGAACACCCTTTTCAGTTCTGTTCACTGTGACAACCAACGGGACAGGCGGATCCTTCACCATCCGGGCCACAAACGACCGGGggttcccctcctcttcccctacaGACCTGACGCTAGTGACCGGGGTCAGTGCCAATGGTACAGTGATTCTCACGGCGCCCGCCAACACCGCGTCGGGCACGGACGTCACCCTGACTATCGAGGCTGAGTCTCCCGGGGCCACCGACACTAACTATGCTGTTCTGCGCCTCACAGTCGTTTCACCGGTGACAGATGTCAGCCGTCCGGTGTGCGATGTGGTCAGCGTAACAGCTAATTGTTCTGACGACTGCAGCCTTTCCGTGTGGGAGCTCTCTGCCAACCTGACGGACGGCAATGGGACGGGCATCGAGCACGTCACTCTGCGCCAGGGCAACGGAACCCTCAACACCACCACGGTGAAGGGCGCTGGGAATTGGACCGTGACTCTGGCAGCCTACAGCGCCTCCTGCTGTTCCCCGGAGGTAGAGCTGGTGGCGGTGGACGGCGCGGGGAATGTGGGAACCTGTTTCAGGTCCATCAGAGTCACAGTGGATACCACTGTCCAGCCACCAGTCACCAAGGCTACCACTAAGAACAGCATCACCGTGACTACAGCTAAAGTTGCCACCACCGCCGCCACCACCGCCGCCACCGCCGCCGCCACCGCCACCGCCGCCGCCGCCGCCGCGAGCAGCAGccatcctctgtccctctcctcgtaTCTCTGTTCCATCATGTTGGTCTCTGTCACACTCGTTTTGAGCCTCTAGTGTCACGGTGTGACTTCTGGTCTTGAAAGATGTTTAATCATATTCAATAGATTCTCTGTTATAATACTGTCTGGTAACTTTCCATTATTGTGTCAATTCTAATaataaatgccatttagcaga
>XM_036989507.1
AGGTTTCTTGTAAATCATGTTGGCACGGCACTTCCTTGTTGTGTTGTATAAAGAGACCCATCATCTGTGTGAATCATATCTCTTCATAGGAGACATAGTTCTGATCCCGTGGCATAACAAGACAGATTGATGATGTCATCACTCCTGGCCGtagtttctctcctcctcttgcaGCCAGGGGTGCAGGGGTTCCTGGCATTCCTCTCAGGCAGCTCCATGAACCACATGGAGATCACTAAGGAAGCCATCTTACAGACCACGGCACAGGTGTGCAAGCAACTGGCCTCTGTTGAAGGAAGAGACTTCACTCTGCCGcccGGACCCCTGACTGCAGAGTCTCTGGCTCTAACCTGCTCCTCATCGGGGTCTGCTAAGAGTTTCCAGAGTGCCATATCAGACGTCACCCGGAGAAATGCCGGAGTTGACGTACGTCACGTGTTCAATGAAGAGTACCACTTTGATAGGGAGAGGTTCGTGGAGGGGCGGAAACTCATCACAGATGGCATGAGCTCTGTCAAAGACAGCATCAAGCAAGGGAACTTTGAGGCAGCAAGACAGAAGCTGGGAGACATTTTACACACCTTACAGGACTTCTACAGTCACAGTAACTGGATAGAACTGGGCAACAGATTTCCCCATTCTAATCTCATCAGATCAGACGTGTCAGACATCGGCCCTGTTGCAGATAAGGACACTCCCACATGTCGGAGCTGTGTCGGTAAAGACTGCCAGAACAACATCCTAGAAAACATAATCAGAGACAAGAAGCTGACCTCGGGATATTTTGGCCTTGGACCTCTTTCTTCCACCAAACCAAAAGGGAAATGCAGCCATGGGGGATCATTGGACCAGACAAGCAGGCAGGAGCCTACAGGTGGGATCAACAAGGACTCGCTTGAGTCCAGCCATGGCAACTGGCACACTGCAGCTGCAGAGGTGGCCGTGGCTGCAACCAGTCAGCTGCTGGAGGACATCAGAGGGGCTGCCGGGGACAGAGACTTCCTACGgaTGATGGGGATCTCTAAGAATGGATCTAGAGCTCTGTGTTTTGTGATCGACACCACCGGCAGCATGTCGGACGACATTGCAGCAGTAAGGGAGACGACATCGTTCATCATTGACAGCAAGAGAGGAACGCCAGACGAGCCCTCAGTCTACATCTTGGTCCCCTTCAATGACCCAGACTTTGGGCCCCTGATGCGGACCACAGACCCAAACGTCTTTAAGGCCCAGATCAATGCACTGAATGCTGATGGAGGAGGGGATTTCCCAGAGATGAGTCTATCAGGACTTCAGTTGGCTTTAACTGGTGCACCCCCCTCTTCAGAGATCTTCCTTTTCACTGATGCCCCTGCAAAAGACTCGAATCTAATGGGCACGGTGATCGCTCTAATAGAACGCACTAAGTCAGTGGTGACCTTCTTCCTAACTGGCTCCTTGGGGCTCCGTCGTAGGAGGGGTAGTGACCAGGGCCAAGGACAGGTCCAGCACAGTCGGATGGCAGTGTCAGACTCCCAGCTCTACAGGGAGCTGGCCCAGTCCTCAGGTGGCCAAGCCATACAGGTCACCAAGACAGAACTGCCCAAGGCCACCAGCATCATTGTGGAATCCTCCAGCTCTTCATTGGTGACCATTCTACAGGCTGTGCGGAGTACAGGAAGGGCTGATAATTTCTCCTTCACTGTAGATGAGTCTGTGAGAAATCTGACTGCTTATGTCACAGGAAGCTCCCTCTCCTTCACGCTCACCAGCCCCTCAGGTGTGTCCCAGAGTAGTGGGGAGGTAAATGGGTCTCTGGCAACCATACAAACCGTGGGGAACTTCCTAACACTGGGGCTGGACAGCCAAGCGGGATTATGGGAAATCCGTGTTTCATCAACTGTGCCCTACTCACTGAAGGTCGTAGGTCAGAGCGCCATCGACTTCCTGTTTGACTTTGTGGAGGTGTCCCAGGGACCTCATCCAGCCTTCGCTGTTTTAGAGTCCCGTCCTCAAGCTGGTGGTAATGCCACCCTGCTGGTGTCAGTGACGGGGAGTGAATCTGTGAGTCTGACAGAGGTGGCGCTGGTTGAGGCCTCGGGGTCAGGAGAGGTCAATGGAACCTTGGAATCAGTCGGCGGCGGGGACTTCCTGGTTACCATGGACAGAATCCCGGCGGGGGAATTTGTTGTGCgtctgagaggagagaacagcgcCACCACTAGGGCATTACCAGACAGCTTCCAGAGACAGTCTTCCACCCGCCTCAGAGCCTCCACTGTTATGGTGATGGCTGAGGCAGAAAGTGACCTGGAGCCTGGAACACCCTTTTCAGTTCTGTTCACTGTGACAACCAACGGGACAGGCGGATCCTTCACCATCCGGGCCACAAACGACCGGGggttcccctcctcttcccctacaGACCTGACGCTAGTGACCGGGGTCAGTGCCAATGGTACAGTGATTCTCACGGCGCCCGCCAACACCGCGTCGGGCACGGACGTCACCCTGACTATCGAGGCTGAGTCTCCCGGGGCCACCGACACTAACTATGCTGTTCTGCGCCTCACAGTCGTTTCACCGGTGACAGATGTCAGCCGTCCGGTGTGCGATGTGGTCAGCGTAACAGCTAATTGTTCTGACGACTGCAGCCTTTCCGTGTGGGAGCTCTCTGCCAACCTGACGGACGGCAATGGGACGGGCATCGAGCACGTCACTCTGCGCCAGGGCAACGGAACCCTCAACACCACCACGGTGAAGGGCGCTGGGAATTGGACCGTGACTCTGGCAGCCTACAGCGCCTCCTGCTGTTCCCCGGAGGTAGAGCTGGTGGCGGTGGACGGCGCGGGGAATGTGGGAACCTGTTTCAGGTCCATCAGAGTCACAGTGGATACCACTGTCCAGCCACCAGTCACCAAGGCTACCACTAAGAACAGCATCACCGTGACTACAGCTAAAGTTGCCACCACCGCCGCCACCACCGCCGCCACCGCCGCCGCCACCGCCACCGCCGCCGCCGCCGCCGCGAGCAGCAGccatcctctgtccctctcctcgtaTCTCTGTTCCATCATGTTGGTCTCTGTCACACTCGTTTTGAGCCTCTAGTGTCACGGTGTGACTTCTGGTCTTGAAAGATGTTTAATCATATTCAATAGATTCTCTGTTATAATACTGTCTGGTAACTTTCCATTATTGTGTCAATTCTAATaataaatgccatttagcaga

Function

NR:

description
von Willebrand factor A domain-containing protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989510.1 False 3200 mRNA 0.55 16 3968210 3995598
XM_036989508.1 False 3160 mRNA 0.55 16 3968210 3995706
XM_036989507.1 True 3213 mRNA 0.54 16 3968210 3995755

Neighbor

gene id symbol gene type direction distance location
LOC110492807 coro6 coding downstream 847 3930198 ~ 3967363 (-)
LOC110491262 NA coding downstream 44744 3916646 ~ 3923466 (-)
LOC110491256 LOC106603993 coding downstream 291356 3633397 ~ 3676854 (-)
LOC110492805 rtn4rl1 coding downstream 391136 3418464 ~ 3577074 (-)
smyd4 smyd4 coding downstream 660378 3280610 ~ 3307832 (-)
LOC110533247 LOC105006428 coding upstream 93171 4088926 ~ 4107932 (-)
cfap300 LOC106592925 coding upstream 145062 4140817 ~ 4148309 (-)
LOC110533249 dlat coding upstream 267024 4262779 ~ 4283484 (-)
c10h11orf1 cssa04h11orf1 coding upstream 290330 4286085 ~ 4301684 (-)
alg9 alg9 coding upstream 314052 4309807 ~ 4363958 (-)
G847234 NA non-coding downstream 5072 3962667 ~ 3963138 (-)
G847222 NA non-coding downstream 39621 3927931 ~ 3928589 (-)
G847215 NA non-coding downstream 54516 3913369 ~ 3913694 (-)
G847212 NA non-coding downstream 57789 3909711 ~ 3910421 (-)
G847205 NA non-coding downstream 74528 3893336 ~ 3893682 (-)
G847248 NA non-coding upstream 1208 3996963 ~ 3997253 (-)
G847549 NA non-coding upstream 8302 4004057 ~ 4103990 (-)
G847548 NA non-coding upstream 18769 4014524 ~ 4042557 (-)
G847568 NA non-coding upstream 48096 4043851 ~ 4061469 (-)
G847569 NA non-coding upstream 48497 4044252 ~ 4048168 (-)
G846600 NA other downstream 667722 3267749 ~ 3300488 (-)
LOC110533269 LOC104929447 other downstream 814987 3151322 ~ 3153275 (-)
LOC110534827 LOC106604014 other downstream 890703 3071880 ~ 3079986 (-)
G846290 NA other downstream 1215107 2748953 ~ 2753103 (-)
G847740 NA other upstream 420851 4416606 ~ 4419950 (-)
G847774 NA other upstream 572057 4567812 ~ 4569190 (-)
G847843 NA other upstream 740774 4736529 ~ 4741588 (-)
G847861 NA other upstream 815193 4810948 ~ 4812182 (-)
G848149 NA other upstream 1146122 5141877 ~ 5142471 (-)

Expression


Co-expression Network